Gene : AT5G56060 A. thaliana TAIR10
Defline:  (1 of 4) PTHR11538//PTHR11538:SF42 - PHENYLALANYL-TRNA SYNTHETASE // SUBFAMILY NOT NAMED Genomic Order:  5075
Name:  ? AT5G56060 Secondary Identifier:  ? PAC:19668292
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56060 0.5kb upstream 0.5kb upstream 1385 true Chr5: 22703508-22704892 Arabidopsis thaliana
AT5G56060 0.5kb upstream 0.5kb upstream 500 false Chr5: 22703508-22704007 Arabidopsis thaliana
AT5G56060 0.5kb downstream 0.5kb downstream 1385 true Chr5: 22704008-22705392 Arabidopsis thaliana
AT5G56060 0.5kb downstream 0.5kb downstream 500 false Chr5: 22704893-22705392 Arabidopsis thaliana
AT5G56060 1.0kb upstream 1.0kb upstream 1885 true Chr5: 22703008-22704892 Arabidopsis thaliana
AT5G56060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22703008-22704007 Arabidopsis thaliana
AT5G56060 1.0kb downstream 1.0kb downstream 1885 true Chr5: 22704008-22705892 Arabidopsis thaliana
AT5G56060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22704893-22705892 Arabidopsis thaliana
AT5G56060 2.0kb upstream 2.0kb upstream 2885 true Chr5: 22702008-22704892 Arabidopsis thaliana
AT5G56060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22702008-22704007 Arabidopsis thaliana
AT5G56060 2.0kb downstream 2.0kb downstream 2885 true Chr5: 22704008-22706892 Arabidopsis thaliana
AT5G56060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22704893-22706892 Arabidopsis thaliana
AT5G56060 5.0kb upstream 5.0kb upstream 5885 true Chr5: 22699008-22704892 Arabidopsis thaliana
AT5G56060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22699008-22704007 Arabidopsis thaliana
AT5G56060 5.0kb downstream 5.0kb downstream 5885 true Chr5: 22704008-22709892 Arabidopsis thaliana
AT5G56060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22704893-22709892 Arabidopsis thaliana
AT5G56060 10.0kb upstream 10.0kb upstream 10885 true Chr5: 22694008-22704892 Arabidopsis thaliana
AT5G56060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22694008-22704007 Arabidopsis thaliana
AT5G56060 10.0kb downstream 10.0kb downstream 10885 true Chr5: 22704008-22714892 Arabidopsis thaliana
AT5G56060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22704893-22714892 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029703 5273 Angiosperm View MSA
122380691 5261 Brassicaceae View MSA
123837497 5264 Brassicales-Malvales View MSA
124343159 5266 SBM View MSA
124250721 5268 Malvidae View MSA
124074900 5270 Rosid View MSA
123750465 5271 Pentapetalae View MSA
122797518 5272 Eudicot View MSA
121349631 5274 Embryophyte View MSA
123425246 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.064     Low Low
cufflinks 0.276     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.202     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.615       High

0 Strain