Gene : AT5G55900 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31902//PTHR31902:SF1 - FAMILY NOT NAMED // ACTIN PATCHES DISTAL PROTEIN 1 Genomic Order:  5059
Name:  ? AT5G55900 Secondary Identifier:  ? PAC:19665681
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55900 0.5kb upstream 0.5kb upstream 2731 true Chr5: 22637031-22639761 Arabidopsis thaliana
AT5G55900 0.5kb upstream 0.5kb upstream 500 false Chr5: 22637031-22637530 Arabidopsis thaliana
AT5G55900 0.5kb downstream 0.5kb downstream 2731 true Chr5: 22637531-22640261 Arabidopsis thaliana
AT5G55900 0.5kb downstream 0.5kb downstream 500 false Chr5: 22639762-22640261 Arabidopsis thaliana
AT5G55900 1.0kb upstream 1.0kb upstream 3231 true Chr5: 22636531-22639761 Arabidopsis thaliana
AT5G55900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22636531-22637530 Arabidopsis thaliana
AT5G55900 1.0kb downstream 1.0kb downstream 3231 true Chr5: 22637531-22640761 Arabidopsis thaliana
AT5G55900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22639762-22640761 Arabidopsis thaliana
AT5G55900 2.0kb upstream 2.0kb upstream 4231 true Chr5: 22635531-22639761 Arabidopsis thaliana
AT5G55900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22635531-22637530 Arabidopsis thaliana
AT5G55900 2.0kb downstream 2.0kb downstream 4231 true Chr5: 22637531-22641761 Arabidopsis thaliana
AT5G55900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22639762-22641761 Arabidopsis thaliana
AT5G55900 5.0kb upstream 5.0kb upstream 7231 true Chr5: 22632531-22639761 Arabidopsis thaliana
AT5G55900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22632531-22637530 Arabidopsis thaliana
AT5G55900 5.0kb downstream 5.0kb downstream 7231 true Chr5: 22637531-22644761 Arabidopsis thaliana
AT5G55900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22639762-22644761 Arabidopsis thaliana
AT5G55900 10.0kb upstream 10.0kb upstream 12231 true Chr5: 22627531-22639761 Arabidopsis thaliana
AT5G55900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22627531-22637530 Arabidopsis thaliana
AT5G55900 10.0kb downstream 10.0kb downstream 12231 true Chr5: 22637531-22649761 Arabidopsis thaliana
AT5G55900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22639762-22649761 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510856 5273 Angiosperm View MSA
122369072 5261 Brassicaceae View MSA
123799711 5264 Brassicales-Malvales View MSA
124297204 5266 SBM View MSA
124149155 5268 Malvidae View MSA
123875017 5270 Rosid View MSA
123458903 5271 Pentapetalae View MSA
122494300 5272 Eudicot View MSA
120783931 5274 Embryophyte View MSA
122825884 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.858        
cufflinks 3.388        
cufflinks 1.597       Low
cufflinks 3.496        
cufflinks 1.569       Low
cufflinks 3.326        

0 Strain