Gene : AT5G55670 A. thaliana TAIR10
Defline:  (1 of 2) K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Genomic Order:  5033
Name:  ? AT5G55670 Secondary Identifier:  ? PAC:19672574
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55670 0.5kb upstream 0.5kb upstream 3362 true Chr5: 22543940-22547301 Arabidopsis thaliana
AT5G55670 0.5kb upstream 0.5kb upstream 500 false Chr5: 22546802-22547301 Arabidopsis thaliana
AT5G55670 0.5kb downstream 0.5kb downstream 3362 true Chr5: 22543440-22546801 Arabidopsis thaliana
AT5G55670 0.5kb downstream 0.5kb downstream 500 false Chr5: 22543440-22543939 Arabidopsis thaliana
AT5G55670 1.0kb upstream 1.0kb upstream 3862 true Chr5: 22543940-22547801 Arabidopsis thaliana
AT5G55670 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22546802-22547801 Arabidopsis thaliana
AT5G55670 1.0kb downstream 1.0kb downstream 3862 true Chr5: 22542940-22546801 Arabidopsis thaliana
AT5G55670 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22542940-22543939 Arabidopsis thaliana
AT5G55670 2.0kb upstream 2.0kb upstream 4862 true Chr5: 22543940-22548801 Arabidopsis thaliana
AT5G55670 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22546802-22548801 Arabidopsis thaliana
AT5G55670 2.0kb downstream 2.0kb downstream 4862 true Chr5: 22541940-22546801 Arabidopsis thaliana
AT5G55670 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22541940-22543939 Arabidopsis thaliana
AT5G55670 5.0kb upstream 5.0kb upstream 7862 true Chr5: 22543940-22551801 Arabidopsis thaliana
AT5G55670 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22546802-22551801 Arabidopsis thaliana
AT5G55670 5.0kb downstream 5.0kb downstream 7862 true Chr5: 22538940-22546801 Arabidopsis thaliana
AT5G55670 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22538940-22543939 Arabidopsis thaliana
AT5G55670 10.0kb upstream 10.0kb upstream 12862 true Chr5: 22543940-22556801 Arabidopsis thaliana
AT5G55670 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22546802-22556801 Arabidopsis thaliana
AT5G55670 10.0kb downstream 10.0kb downstream 12862 true Chr5: 22533940-22546801 Arabidopsis thaliana
AT5G55670 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22533940-22543939 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369062 5261 Brassicaceae View MSA
123831378 5264 Brassicales-Malvales View MSA
124350571 5266 SBM View MSA
124251712 5268 Malvidae View MSA
124074080 5270 Rosid View MSA
123752674 5271 Pentapetalae View MSA
122796288 5272 Eudicot View MSA
122042872 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349327 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.842        
cufflinks 11.924        
cufflinks 7.18       Low
cufflinks 13.549       High
cufflinks 7.747        
cufflinks 13.724       High

0 Strain