Gene : AT5G54620 A. thaliana TAIR10
Defline:  (1 of 6) PTHR24128:SF24 - ANKYRIN REPEAT FAMILY PROTEIN-RELATED Genomic Order:  4920
Name:  ? AT5G54620 Secondary Identifier:  ? PAC:19670762
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54620 0.5kb upstream 0.5kb upstream 2486 true Chr5: 22187761-22190246 Arabidopsis thaliana
AT5G54620 0.5kb upstream 0.5kb upstream 500 false Chr5: 22189747-22190246 Arabidopsis thaliana
AT5G54620 0.5kb downstream 0.5kb downstream 2486 true Chr5: 22187261-22189746 Arabidopsis thaliana
AT5G54620 0.5kb downstream 0.5kb downstream 500 false Chr5: 22187261-22187760 Arabidopsis thaliana
AT5G54620 1.0kb upstream 1.0kb upstream 2986 true Chr5: 22187761-22190746 Arabidopsis thaliana
AT5G54620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22189747-22190746 Arabidopsis thaliana
AT5G54620 1.0kb downstream 1.0kb downstream 2986 true Chr5: 22186761-22189746 Arabidopsis thaliana
AT5G54620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22186761-22187760 Arabidopsis thaliana
AT5G54620 2.0kb upstream 2.0kb upstream 3986 true Chr5: 22187761-22191746 Arabidopsis thaliana
AT5G54620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22189747-22191746 Arabidopsis thaliana
AT5G54620 2.0kb downstream 2.0kb downstream 3986 true Chr5: 22185761-22189746 Arabidopsis thaliana
AT5G54620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22185761-22187760 Arabidopsis thaliana
AT5G54620 5.0kb upstream 5.0kb upstream 6986 true Chr5: 22187761-22194746 Arabidopsis thaliana
AT5G54620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22189747-22194746 Arabidopsis thaliana
AT5G54620 5.0kb downstream 5.0kb downstream 6986 true Chr5: 22182761-22189746 Arabidopsis thaliana
AT5G54620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22182761-22187760 Arabidopsis thaliana
AT5G54620 10.0kb upstream 10.0kb upstream 11986 true Chr5: 22187761-22199746 Arabidopsis thaliana
AT5G54620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22189747-22199746 Arabidopsis thaliana
AT5G54620 10.0kb downstream 10.0kb downstream 11986 true Chr5: 22177761-22189746 Arabidopsis thaliana
AT5G54620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22177761-22187760 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363027 5261 Brassicaceae View MSA
123838838 5264 Brassicales-Malvales View MSA
124351446 5266 SBM View MSA
124249893 5268 Malvidae View MSA
124074725 5270 Rosid View MSA
123753624 5271 Pentapetalae View MSA
122797775 5272 Eudicot View MSA
122051097 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351705 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.028     Low  
cufflinks 0.122     Low  
cufflinks 0.082     Low  
cufflinks 0.204     Low High
cufflinks 0.091     Low  
cufflinks 0.016     Low Low

0 Strain