Gene : AT5G54630 A. thaliana TAIR10
Defline:  zinc finger protein-related Genomic Order:  4921
Name:  ? AT5G54630 Secondary Identifier:  ? PAC:19672940
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54630 0.5kb upstream 0.5kb upstream 2310 true Chr5: 22192499-22194808 Arabidopsis thaliana
AT5G54630 0.5kb upstream 0.5kb upstream 500 false Chr5: 22194309-22194808 Arabidopsis thaliana
AT5G54630 0.5kb downstream 0.5kb downstream 2310 true Chr5: 22191999-22194308 Arabidopsis thaliana
AT5G54630 0.5kb downstream 0.5kb downstream 500 false Chr5: 22191999-22192498 Arabidopsis thaliana
AT5G54630 1.0kb upstream 1.0kb upstream 2810 true Chr5: 22192499-22195308 Arabidopsis thaliana
AT5G54630 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22194309-22195308 Arabidopsis thaliana
AT5G54630 1.0kb downstream 1.0kb downstream 2810 true Chr5: 22191499-22194308 Arabidopsis thaliana
AT5G54630 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22191499-22192498 Arabidopsis thaliana
AT5G54630 2.0kb upstream 2.0kb upstream 3810 true Chr5: 22192499-22196308 Arabidopsis thaliana
AT5G54630 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22194309-22196308 Arabidopsis thaliana
AT5G54630 2.0kb downstream 2.0kb downstream 3810 true Chr5: 22190499-22194308 Arabidopsis thaliana
AT5G54630 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22190499-22192498 Arabidopsis thaliana
AT5G54630 5.0kb upstream 5.0kb upstream 6810 true Chr5: 22192499-22199308 Arabidopsis thaliana
AT5G54630 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22194309-22199308 Arabidopsis thaliana
AT5G54630 5.0kb downstream 5.0kb downstream 6810 true Chr5: 22187499-22194308 Arabidopsis thaliana
AT5G54630 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22187499-22192498 Arabidopsis thaliana
AT5G54630 10.0kb upstream 10.0kb upstream 11810 true Chr5: 22192499-22204308 Arabidopsis thaliana
AT5G54630 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22194309-22204308 Arabidopsis thaliana
AT5G54630 10.0kb downstream 10.0kb downstream 11810 true Chr5: 22182499-22194308 Arabidopsis thaliana
AT5G54630 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22182499-22192498 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041032 5273 Angiosperm View MSA
122365843 5261 Brassicaceae View MSA
123830298 5264 Brassicales-Malvales View MSA
124338006 5266 SBM View MSA
124241500 5268 Malvidae View MSA
124062169 5270 Rosid View MSA
123748293 5271 Pentapetalae View MSA
122794987 5272 Eudicot View MSA
121349444 5274 Embryophyte View MSA
123381313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.541        
cufflinks 0.117     Low  
cufflinks 12.407        
cufflinks 0.129     Low  
cufflinks 14.001        
cufflinks 0.191     Low  

0 Strain