Gene : AT5G57290 A. thaliana TAIR10
Defline:  (1 of 6) K02942 - large subunit ribosomal protein LP1 (RP-LP1, RPLP1) Genomic Order:  5208
Name:  ? AT5G57290 Secondary Identifier:  ? PAC:19671881
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57290 0.5kb upstream 0.5kb upstream 1625 true Chr5: 23206802-23208426 Arabidopsis thaliana
AT5G57290 0.5kb upstream 0.5kb upstream 500 false Chr5: 23207927-23208426 Arabidopsis thaliana
AT5G57290 0.5kb downstream 0.5kb downstream 1625 true Chr5: 23206302-23207926 Arabidopsis thaliana
AT5G57290 0.5kb downstream 0.5kb downstream 500 false Chr5: 23206302-23206801 Arabidopsis thaliana
AT5G57290 1.0kb upstream 1.0kb upstream 2125 true Chr5: 23206802-23208926 Arabidopsis thaliana
AT5G57290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23207927-23208926 Arabidopsis thaliana
AT5G57290 1.0kb downstream 1.0kb downstream 2125 true Chr5: 23205802-23207926 Arabidopsis thaliana
AT5G57290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23205802-23206801 Arabidopsis thaliana
AT5G57290 2.0kb upstream 2.0kb upstream 3125 true Chr5: 23206802-23209926 Arabidopsis thaliana
AT5G57290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23207927-23209926 Arabidopsis thaliana
AT5G57290 2.0kb downstream 2.0kb downstream 3125 true Chr5: 23204802-23207926 Arabidopsis thaliana
AT5G57290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23204802-23206801 Arabidopsis thaliana
AT5G57290 5.0kb upstream 5.0kb upstream 6125 true Chr5: 23206802-23212926 Arabidopsis thaliana
AT5G57290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23207927-23212926 Arabidopsis thaliana
AT5G57290 5.0kb downstream 5.0kb downstream 6125 true Chr5: 23201802-23207926 Arabidopsis thaliana
AT5G57290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23201802-23206801 Arabidopsis thaliana
AT5G57290 10.0kb upstream 10.0kb upstream 11125 true Chr5: 23206802-23217926 Arabidopsis thaliana
AT5G57290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23207927-23217926 Arabidopsis thaliana
AT5G57290 10.0kb downstream 10.0kb downstream 11125 true Chr5: 23196802-23207926 Arabidopsis thaliana
AT5G57290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23196802-23206801 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380092 5261 Brassicaceae View MSA
123827526 5264 Brassicales-Malvales View MSA
124343426 5266 SBM View MSA
124243388 5268 Malvidae View MSA
124060612 5270 Rosid View MSA
123738498 5271 Pentapetalae View MSA
122786721 5272 Eudicot View MSA
122041994 5273 Angiosperm View MSA
121347271 5274 Embryophyte View MSA
123424793 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.617     High  
cufflinks 44.447     High  
cufflinks 28.149     High Low
cufflinks 48.665     High  
cufflinks 28.32     High Low
cufflinks 59.146     High High

0 Strain