Gene : AT5G57120 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23216 - NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 Genomic Order:  5189
Name:  ? AT5G57120 Secondary Identifier:  ? PAC:19670218
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57120 0.5kb upstream 0.5kb upstream 2474 true Chr5: 23122540-23125013 Arabidopsis thaliana
AT5G57120 0.5kb upstream 0.5kb upstream 500 false Chr5: 23124514-23125013 Arabidopsis thaliana
AT5G57120 0.5kb downstream 0.5kb downstream 2474 true Chr5: 23122040-23124513 Arabidopsis thaliana
AT5G57120 0.5kb downstream 0.5kb downstream 500 false Chr5: 23122040-23122539 Arabidopsis thaliana
AT5G57120 1.0kb upstream 1.0kb upstream 2974 true Chr5: 23122540-23125513 Arabidopsis thaliana
AT5G57120 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23124514-23125513 Arabidopsis thaliana
AT5G57120 1.0kb downstream 1.0kb downstream 2974 true Chr5: 23121540-23124513 Arabidopsis thaliana
AT5G57120 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23121540-23122539 Arabidopsis thaliana
AT5G57120 2.0kb upstream 2.0kb upstream 3974 true Chr5: 23122540-23126513 Arabidopsis thaliana
AT5G57120 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23124514-23126513 Arabidopsis thaliana
AT5G57120 2.0kb downstream 2.0kb downstream 3974 true Chr5: 23120540-23124513 Arabidopsis thaliana
AT5G57120 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23120540-23122539 Arabidopsis thaliana
AT5G57120 5.0kb upstream 5.0kb upstream 6974 true Chr5: 23122540-23129513 Arabidopsis thaliana
AT5G57120 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23124514-23129513 Arabidopsis thaliana
AT5G57120 5.0kb downstream 5.0kb downstream 6974 true Chr5: 23117540-23124513 Arabidopsis thaliana
AT5G57120 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23117540-23122539 Arabidopsis thaliana
AT5G57120 10.0kb upstream 10.0kb upstream 11974 true Chr5: 23122540-23134513 Arabidopsis thaliana
AT5G57120 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23124514-23134513 Arabidopsis thaliana
AT5G57120 10.0kb downstream 10.0kb downstream 11974 true Chr5: 23112540-23124513 Arabidopsis thaliana
AT5G57120 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23112540-23122539 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377666 5261 Brassicaceae View MSA
123837176 5264 Brassicales-Malvales View MSA
124341459 5266 SBM View MSA
124248362 5268 Malvidae View MSA
124071277 5270 Rosid View MSA
123738497 5271 Pentapetalae View MSA
122794212 5272 Eudicot View MSA
122048501 5273 Angiosperm View MSA
121348991 5274 Embryophyte View MSA
123425594 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.042     High  
cufflinks 55.516     High High
cufflinks 23.157        
cufflinks 50.035     High  
cufflinks 19.435       Low
cufflinks 49.929     High  

0 Strain