Gene : AT5G59770 A. thaliana TAIR10
Defline:  (1 of 2) 4.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase Genomic Order:  5472
Name:  ? AT5G59770 Secondary Identifier:  ? PAC:19666621
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5080 Arabidopsis thaliana pathologic  
Athaliana PWY-6433 Arabidopsis thaliana pathologic  
Athaliana PWY-6598 Arabidopsis thaliana pathologic  
Athaliana PWY-7036 Arabidopsis thaliana pathologic  
Athaliana PWY-7601 Arabidopsis thaliana pathologic  
Athaliana PWY-7606 Arabidopsis thaliana pathologic  
Athaliana PWY-7619 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59770 0.5kb upstream 0.5kb upstream 2325 true Chr5: 24079392-24081716 Arabidopsis thaliana
AT5G59770 0.5kb upstream 0.5kb upstream 500 false Chr5: 24081217-24081716 Arabidopsis thaliana
AT5G59770 0.5kb downstream 0.5kb downstream 2325 true Chr5: 24078892-24081216 Arabidopsis thaliana
AT5G59770 0.5kb downstream 0.5kb downstream 500 false Chr5: 24078892-24079391 Arabidopsis thaliana
AT5G59770 1.0kb upstream 1.0kb upstream 2825 true Chr5: 24079392-24082216 Arabidopsis thaliana
AT5G59770 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24081217-24082216 Arabidopsis thaliana
AT5G59770 1.0kb downstream 1.0kb downstream 2825 true Chr5: 24078392-24081216 Arabidopsis thaliana
AT5G59770 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24078392-24079391 Arabidopsis thaliana
AT5G59770 2.0kb upstream 2.0kb upstream 3825 true Chr5: 24079392-24083216 Arabidopsis thaliana
AT5G59770 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24081217-24083216 Arabidopsis thaliana
AT5G59770 2.0kb downstream 2.0kb downstream 3825 true Chr5: 24077392-24081216 Arabidopsis thaliana
AT5G59770 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24077392-24079391 Arabidopsis thaliana
AT5G59770 5.0kb upstream 5.0kb upstream 6825 true Chr5: 24079392-24086216 Arabidopsis thaliana
AT5G59770 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24081217-24086216 Arabidopsis thaliana
AT5G59770 5.0kb downstream 5.0kb downstream 6825 true Chr5: 24074392-24081216 Arabidopsis thaliana
AT5G59770 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24074392-24079391 Arabidopsis thaliana
AT5G59770 10.0kb upstream 10.0kb upstream 11825 true Chr5: 24079392-24091216 Arabidopsis thaliana
AT5G59770 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24081217-24091216 Arabidopsis thaliana
AT5G59770 10.0kb downstream 10.0kb downstream 11825 true Chr5: 24069392-24081216 Arabidopsis thaliana
AT5G59770 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24069392-24079391 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330978 5261 Brassicaceae Singleton cluster - no MSA
123836753 5264 Brassicales-Malvales View MSA
124349665 5266 SBM View MSA
124243174 5268 Malvidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.827        
cufflinks 6.506        
cufflinks 13.491        
cufflinks 6.743        
cufflinks 16.13       High
cufflinks 4.347       Low

0 Strain