Gene : AT5G58680 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23315//PTHR23315:SF64 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // ARM REPEAT SUPERFAMILY PROTEIN-RELATED Genomic Order:  5360
Name:  ? AT5G58680 Secondary Identifier:  ? PAC:19670930
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58680 0.5kb upstream 0.5kb upstream 1740 true Chr5: 23708112-23709851 Arabidopsis thaliana
AT5G58680 0.5kb upstream 0.5kb upstream 500 false Chr5: 23709352-23709851 Arabidopsis thaliana
AT5G58680 0.5kb downstream 0.5kb downstream 1740 true Chr5: 23707612-23709351 Arabidopsis thaliana
AT5G58680 0.5kb downstream 0.5kb downstream 500 false Chr5: 23707612-23708111 Arabidopsis thaliana
AT5G58680 1.0kb upstream 1.0kb upstream 2240 true Chr5: 23708112-23710351 Arabidopsis thaliana
AT5G58680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23709352-23710351 Arabidopsis thaliana
AT5G58680 1.0kb downstream 1.0kb downstream 2240 true Chr5: 23707112-23709351 Arabidopsis thaliana
AT5G58680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23707112-23708111 Arabidopsis thaliana
AT5G58680 2.0kb upstream 2.0kb upstream 3240 true Chr5: 23708112-23711351 Arabidopsis thaliana
AT5G58680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23709352-23711351 Arabidopsis thaliana
AT5G58680 2.0kb downstream 2.0kb downstream 3240 true Chr5: 23706112-23709351 Arabidopsis thaliana
AT5G58680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23706112-23708111 Arabidopsis thaliana
AT5G58680 5.0kb upstream 5.0kb upstream 6240 true Chr5: 23708112-23714351 Arabidopsis thaliana
AT5G58680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23709352-23714351 Arabidopsis thaliana
AT5G58680 5.0kb downstream 5.0kb downstream 6240 true Chr5: 23703112-23709351 Arabidopsis thaliana
AT5G58680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23703112-23708111 Arabidopsis thaliana
AT5G58680 10.0kb upstream 10.0kb upstream 11240 true Chr5: 23708112-23719351 Arabidopsis thaliana
AT5G58680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23709352-23719351 Arabidopsis thaliana
AT5G58680 10.0kb downstream 10.0kb downstream 11240 true Chr5: 23698112-23709351 Arabidopsis thaliana
AT5G58680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23698112-23708111 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343407 5261 Brassicaceae View MSA
123783620 5264 Brassicales-Malvales View MSA
124281841 5266 SBM View MSA
124136525 5268 Malvidae View MSA
123864371 5270 Rosid View MSA
123449688 5271 Pentapetalae View MSA
122485218 5272 Eudicot View MSA
122047574 5273 Angiosperm View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.188       Low
cufflinks 48.319     High High
cufflinks 2.614        
cufflinks 41.184     High  
cufflinks 1.455        
cufflinks 28.631        

0 Strain