Gene : RR18 A. thaliana TAIR10
Primary Identifier:  ? AT5G58080 Defline:  (1 of 1) PTHR26402//PTHR26402:SF558 - RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM // TWO-COMPONENT RESPONSE REGULATOR ARR18
Genomic Order:  5297 Name:  ? AT5G58080
Secondary Identifier:  ? PAC:19670839
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58080 0.5kb upstream 0.5kb upstream 2859 true Chr5: 23501785-23504643 Arabidopsis thaliana
AT5G58080 0.5kb upstream 0.5kb upstream 500 false Chr5: 23504144-23504643 Arabidopsis thaliana
AT5G58080 0.5kb downstream 0.5kb downstream 2859 true Chr5: 23501285-23504143 Arabidopsis thaliana
AT5G58080 0.5kb downstream 0.5kb downstream 500 false Chr5: 23501285-23501784 Arabidopsis thaliana
AT5G58080 1.0kb upstream 1.0kb upstream 3359 true Chr5: 23501785-23505143 Arabidopsis thaliana
AT5G58080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23504144-23505143 Arabidopsis thaliana
AT5G58080 1.0kb downstream 1.0kb downstream 3359 true Chr5: 23500785-23504143 Arabidopsis thaliana
AT5G58080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23500785-23501784 Arabidopsis thaliana
AT5G58080 2.0kb upstream 2.0kb upstream 4359 true Chr5: 23501785-23506143 Arabidopsis thaliana
AT5G58080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23504144-23506143 Arabidopsis thaliana
AT5G58080 2.0kb downstream 2.0kb downstream 4359 true Chr5: 23499785-23504143 Arabidopsis thaliana
AT5G58080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23499785-23501784 Arabidopsis thaliana
AT5G58080 5.0kb upstream 5.0kb upstream 7359 true Chr5: 23501785-23509143 Arabidopsis thaliana
AT5G58080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23504144-23509143 Arabidopsis thaliana
AT5G58080 5.0kb downstream 5.0kb downstream 7359 true Chr5: 23496785-23504143 Arabidopsis thaliana
AT5G58080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23496785-23501784 Arabidopsis thaliana
AT5G58080 10.0kb upstream 10.0kb upstream 12359 true Chr5: 23501785-23514143 Arabidopsis thaliana
AT5G58080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23504144-23514143 Arabidopsis thaliana
AT5G58080 10.0kb downstream 10.0kb downstream 12359 true Chr5: 23491785-23504143 Arabidopsis thaliana
AT5G58080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23491785-23501784 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375814 5261 Brassicaceae View MSA
123841325 5264 Brassicales-Malvales View MSA
124337488 5266 SBM View MSA
124238819 5268 Malvidae View MSA
124066556 5270 Rosid View MSA
123743019 5271 Pentapetalae View MSA
122794992 5272 Eudicot View MSA
122046699 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351259 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.037     Low  
cufflinks 0.141     Low High
cufflinks 0.033     Low  
cufflinks 0.049     Low  
cufflinks 0.014     Low Low
cufflinks 0.129     Low High

0 Strain