Gene : AT5G61090 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21559 - DYSTROGLYCAN-RELATED Genomic Order:  5611
Name:  ? AT5G61090 Secondary Identifier:  ? PAC:19665417
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61090 0.5kb upstream 0.5kb upstream 3313 true Chr5: 24574902-24578214 Arabidopsis thaliana
AT5G61090 0.5kb upstream 0.5kb upstream 500 false Chr5: 24577715-24578214 Arabidopsis thaliana
AT5G61090 0.5kb downstream 0.5kb downstream 3313 true Chr5: 24574402-24577714 Arabidopsis thaliana
AT5G61090 0.5kb downstream 0.5kb downstream 500 false Chr5: 24574402-24574901 Arabidopsis thaliana
AT5G61090 1.0kb upstream 1.0kb upstream 3813 true Chr5: 24574902-24578714 Arabidopsis thaliana
AT5G61090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24577715-24578714 Arabidopsis thaliana
AT5G61090 1.0kb downstream 1.0kb downstream 3813 true Chr5: 24573902-24577714 Arabidopsis thaliana
AT5G61090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24573902-24574901 Arabidopsis thaliana
AT5G61090 2.0kb upstream 2.0kb upstream 4813 true Chr5: 24574902-24579714 Arabidopsis thaliana
AT5G61090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24577715-24579714 Arabidopsis thaliana
AT5G61090 2.0kb downstream 2.0kb downstream 4813 true Chr5: 24572902-24577714 Arabidopsis thaliana
AT5G61090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24572902-24574901 Arabidopsis thaliana
AT5G61090 5.0kb upstream 5.0kb upstream 7813 true Chr5: 24574902-24582714 Arabidopsis thaliana
AT5G61090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24577715-24582714 Arabidopsis thaliana
AT5G61090 5.0kb downstream 5.0kb downstream 7813 true Chr5: 24569902-24577714 Arabidopsis thaliana
AT5G61090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24569902-24574901 Arabidopsis thaliana
AT5G61090 10.0kb upstream 10.0kb upstream 12813 true Chr5: 24574902-24587714 Arabidopsis thaliana
AT5G61090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24577715-24587714 Arabidopsis thaliana
AT5G61090 10.0kb downstream 10.0kb downstream 12813 true Chr5: 24564902-24577714 Arabidopsis thaliana
AT5G61090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24564902-24574901 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364218 5261 Brassicaceae View MSA
123798716 5264 Brassicales-Malvales View MSA
124296318 5266 SBM View MSA
124251971 5268 Malvidae View MSA
124050819 5270 Rosid View MSA
123744340 5271 Pentapetalae View MSA
122794905 5272 Eudicot View MSA
122051166 5273 Angiosperm View MSA
121312323 5274 Embryophyte View MSA
123349506 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.124     Low  
cufflinks 0.274     Low  
cufflinks 0.03     Low Low
cufflinks 0.249     Low  
cufflinks 0.025     Low Low
cufflinks 0.457       High

0 Strain