Gene : GPAT9 A. thaliana TAIR10

Primary Identifier:  ? AT5G60620 Defline:  (1 of 1) K13506 - glycerol-3-phosphate O-acyltransferase 3/4 (GPAT3_4, AGPAT9, AGPAT6)
Genomic Order:  5562 Name:  ? AT5G60620
Secondary Identifier:  ? PAC:19671015

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-1319 Arabidopsis thaliana pathologic  
Athaliana PWY4FS-7 Arabidopsis thaliana pathologic  
Athaliana PWY-7411 Arabidopsis thaliana pathologic  
Athaliana TRIGLSYN-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60620 0.5kb upstream 0.5kb upstream 3093 true Chr5: 24366698-24369790 Arabidopsis thaliana
AT5G60620 0.5kb upstream 0.5kb upstream 500 false Chr5: 24366698-24367197 Arabidopsis thaliana
AT5G60620 0.5kb downstream 0.5kb downstream 3093 true Chr5: 24367198-24370290 Arabidopsis thaliana
AT5G60620 0.5kb downstream 0.5kb downstream 500 false Chr5: 24369791-24370290 Arabidopsis thaliana
AT5G60620 1.0kb upstream 1.0kb upstream 3593 true Chr5: 24366198-24369790 Arabidopsis thaliana
AT5G60620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24366198-24367197 Arabidopsis thaliana
AT5G60620 1.0kb downstream 1.0kb downstream 3593 true Chr5: 24367198-24370790 Arabidopsis thaliana
AT5G60620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24369791-24370790 Arabidopsis thaliana
AT5G60620 2.0kb upstream 2.0kb upstream 4593 true Chr5: 24365198-24369790 Arabidopsis thaliana
AT5G60620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24365198-24367197 Arabidopsis thaliana
AT5G60620 2.0kb downstream 2.0kb downstream 4593 true Chr5: 24367198-24371790 Arabidopsis thaliana
AT5G60620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24369791-24371790 Arabidopsis thaliana
AT5G60620 5.0kb upstream 5.0kb upstream 7593 true Chr5: 24362198-24369790 Arabidopsis thaliana
AT5G60620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24362198-24367197 Arabidopsis thaliana
AT5G60620 5.0kb downstream 5.0kb downstream 7593 true Chr5: 24367198-24374790 Arabidopsis thaliana
AT5G60620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24369791-24374790 Arabidopsis thaliana
AT5G60620 10.0kb upstream 10.0kb upstream 12593 true Chr5: 24357198-24369790 Arabidopsis thaliana
AT5G60620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24357198-24367197 Arabidopsis thaliana
AT5G60620 10.0kb downstream 10.0kb downstream 12593 true Chr5: 24367198-24379790 Arabidopsis thaliana
AT5G60620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24369791-24379790 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372849 5261 Brassicaceae View MSA
123831200 5264 Brassicales-Malvales View MSA
124336652 5266 SBM View MSA
124240700 5268 Malvidae View MSA
124065139 5270 Rosid View MSA
123751222 5271 Pentapetalae View MSA
122796143 5272 Eudicot View MSA
122045469 5273 Angiosperm View MSA
121344945 5274 Embryophyte View MSA
123427569 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.779        
cufflinks 19.048        
cufflinks 16.238       Low
cufflinks 19.86       High
cufflinks 17.027        
cufflinks 18.187        

0 Strain