Gene : AT5G60700 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33604:SF2 - GLYCOSYLTRANSFERASE FAMILY PROTEIN 2 Genomic Order:  5570
Name:  ? AT5G60700 Secondary Identifier:  ? PAC:19670468
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60700 0.5kb upstream 0.5kb upstream 3320 true Chr5: 24402129-24405448 Arabidopsis thaliana
AT5G60700 0.5kb upstream 0.5kb upstream 500 false Chr5: 24404949-24405448 Arabidopsis thaliana
AT5G60700 0.5kb downstream 0.5kb downstream 3320 true Chr5: 24401629-24404948 Arabidopsis thaliana
AT5G60700 0.5kb downstream 0.5kb downstream 500 false Chr5: 24401629-24402128 Arabidopsis thaliana
AT5G60700 1.0kb upstream 1.0kb upstream 3820 true Chr5: 24402129-24405948 Arabidopsis thaliana
AT5G60700 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24404949-24405948 Arabidopsis thaliana
AT5G60700 1.0kb downstream 1.0kb downstream 3820 true Chr5: 24401129-24404948 Arabidopsis thaliana
AT5G60700 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24401129-24402128 Arabidopsis thaliana
AT5G60700 2.0kb upstream 2.0kb upstream 4820 true Chr5: 24402129-24406948 Arabidopsis thaliana
AT5G60700 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24404949-24406948 Arabidopsis thaliana
AT5G60700 2.0kb downstream 2.0kb downstream 4820 true Chr5: 24400129-24404948 Arabidopsis thaliana
AT5G60700 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24400129-24402128 Arabidopsis thaliana
AT5G60700 5.0kb upstream 5.0kb upstream 7820 true Chr5: 24402129-24409948 Arabidopsis thaliana
AT5G60700 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24404949-24409948 Arabidopsis thaliana
AT5G60700 5.0kb downstream 5.0kb downstream 7820 true Chr5: 24397129-24404948 Arabidopsis thaliana
AT5G60700 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24397129-24402128 Arabidopsis thaliana
AT5G60700 10.0kb upstream 10.0kb upstream 12820 true Chr5: 24402129-24414948 Arabidopsis thaliana
AT5G60700 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24404949-24414948 Arabidopsis thaliana
AT5G60700 10.0kb downstream 10.0kb downstream 12820 true Chr5: 24392129-24404948 Arabidopsis thaliana
AT5G60700 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24392129-24402128 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331299 5261 Brassicaceae Singleton cluster - no MSA
123837063 5264 Brassicales-Malvales View MSA
124342347 5266 SBM View MSA
124251345 5268 Malvidae View MSA
124061550 5270 Rosid View MSA
123753195 5271 Pentapetalae View MSA
122791736 5272 Eudicot View MSA
122041734 5273 Angiosperm View MSA
121351549 5274 Embryophyte View MSA
123382221 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.513        
cufflinks 13.194        
cufflinks 8.031       Low
cufflinks 15.326       High
cufflinks 9.021        
cufflinks 13.019        

0 Strain