Gene : AT5G60520 A. thaliana TAIR10
Defline:  (1 of 6) PF06830 - Root cap (Root_cap) Genomic Order:  5549
Name:  ? AT5G60520 Secondary Identifier:  ? PAC:19665946
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60520 0.5kb upstream 0.5kb upstream 1876 true Chr5: 24331670-24333545 Arabidopsis thaliana
AT5G60520 0.5kb upstream 0.5kb upstream 500 false Chr5: 24333046-24333545 Arabidopsis thaliana
AT5G60520 0.5kb downstream 0.5kb downstream 1876 true Chr5: 24331170-24333045 Arabidopsis thaliana
AT5G60520 0.5kb downstream 0.5kb downstream 500 false Chr5: 24331170-24331669 Arabidopsis thaliana
AT5G60520 1.0kb upstream 1.0kb upstream 2376 true Chr5: 24331670-24334045 Arabidopsis thaliana
AT5G60520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24333046-24334045 Arabidopsis thaliana
AT5G60520 1.0kb downstream 1.0kb downstream 2376 true Chr5: 24330670-24333045 Arabidopsis thaliana
AT5G60520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24330670-24331669 Arabidopsis thaliana
AT5G60520 2.0kb upstream 2.0kb upstream 3376 true Chr5: 24331670-24335045 Arabidopsis thaliana
AT5G60520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24333046-24335045 Arabidopsis thaliana
AT5G60520 2.0kb downstream 2.0kb downstream 3376 true Chr5: 24329670-24333045 Arabidopsis thaliana
AT5G60520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24329670-24331669 Arabidopsis thaliana
AT5G60520 5.0kb upstream 5.0kb upstream 6376 true Chr5: 24331670-24338045 Arabidopsis thaliana
AT5G60520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24333046-24338045 Arabidopsis thaliana
AT5G60520 5.0kb downstream 5.0kb downstream 6376 true Chr5: 24326670-24333045 Arabidopsis thaliana
AT5G60520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24326670-24331669 Arabidopsis thaliana
AT5G60520 10.0kb upstream 10.0kb upstream 11376 true Chr5: 24331670-24343045 Arabidopsis thaliana
AT5G60520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24333046-24343045 Arabidopsis thaliana
AT5G60520 10.0kb downstream 10.0kb downstream 11376 true Chr5: 24321670-24333045 Arabidopsis thaliana
AT5G60520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24321670-24331669 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372660 5261 Brassicaceae View MSA
123835424 5264 Brassicales-Malvales View MSA
124343378 5266 SBM View MSA
124246752 5268 Malvidae View MSA
124061597 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.291        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.494        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.446       High

0 Strain