Gene : AT5G59940 A. thaliana TAIR10
Defline:  (1 of 126) PTHR32410//PTHR32410:SF152 - FAMILY NOT NAMED // C1 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  5490
Name:  ? AT5G59940 Secondary Identifier:  ? PAC:19667651
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59940 0.5kb upstream 0.5kb upstream 2456 true Chr5: 24136912-24139367 Arabidopsis thaliana
AT5G59940 0.5kb upstream 0.5kb upstream 500 false Chr5: 24136912-24137411 Arabidopsis thaliana
AT5G59940 0.5kb downstream 0.5kb downstream 2456 true Chr5: 24137412-24139867 Arabidopsis thaliana
AT5G59940 0.5kb downstream 0.5kb downstream 500 false Chr5: 24139368-24139867 Arabidopsis thaliana
AT5G59940 1.0kb upstream 1.0kb upstream 2956 true Chr5: 24136412-24139367 Arabidopsis thaliana
AT5G59940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24136412-24137411 Arabidopsis thaliana
AT5G59940 1.0kb downstream 1.0kb downstream 2956 true Chr5: 24137412-24140367 Arabidopsis thaliana
AT5G59940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24139368-24140367 Arabidopsis thaliana
AT5G59940 2.0kb upstream 2.0kb upstream 3956 true Chr5: 24135412-24139367 Arabidopsis thaliana
AT5G59940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24135412-24137411 Arabidopsis thaliana
AT5G59940 2.0kb downstream 2.0kb downstream 3956 true Chr5: 24137412-24141367 Arabidopsis thaliana
AT5G59940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24139368-24141367 Arabidopsis thaliana
AT5G59940 5.0kb upstream 5.0kb upstream 6956 true Chr5: 24132412-24139367 Arabidopsis thaliana
AT5G59940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24132412-24137411 Arabidopsis thaliana
AT5G59940 5.0kb downstream 5.0kb downstream 6956 true Chr5: 24137412-24144367 Arabidopsis thaliana
AT5G59940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24139368-24144367 Arabidopsis thaliana
AT5G59940 10.0kb upstream 10.0kb upstream 11956 true Chr5: 24127412-24139367 Arabidopsis thaliana
AT5G59940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24127412-24137411 Arabidopsis thaliana
AT5G59940 10.0kb downstream 10.0kb downstream 11956 true Chr5: 24137412-24149367 Arabidopsis thaliana
AT5G59940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24139368-24149367 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331075 5261 Brassicaceae Singleton cluster - no MSA
123772282 5264 Brassicales-Malvales Singleton cluster - no MSA
124270802 5266 SBM Singleton cluster - no MSA
124126852 5268 Malvidae Singleton cluster - no MSA
124070692 5270 Rosid View MSA
123751823 5271 Pentapetalae View MSA
122797568 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.029     Low Low
cufflinks 1.668        
cufflinks 0.057     Low  
cufflinks 2.018        
cufflinks 0.037     Low  
cufflinks 1.919        

0 Strain