Gene : AT5G62580 A. thaliana TAIR10
Defline:  (1 of 9) PF02985 - HEAT repeat (HEAT) Genomic Order:  5766
Name:  ? AT5G62580 Secondary Identifier:  ? PAC:19666561
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62580 0.5kb upstream 0.5kb upstream 3164 true Chr5: 25119363-25122526 Arabidopsis thaliana
AT5G62580 0.5kb upstream 0.5kb upstream 500 false Chr5: 25119363-25119862 Arabidopsis thaliana
AT5G62580 0.5kb downstream 0.5kb downstream 3164 true Chr5: 25119863-25123026 Arabidopsis thaliana
AT5G62580 0.5kb downstream 0.5kb downstream 500 false Chr5: 25122527-25123026 Arabidopsis thaliana
AT5G62580 1.0kb upstream 1.0kb upstream 3664 true Chr5: 25118863-25122526 Arabidopsis thaliana
AT5G62580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25118863-25119862 Arabidopsis thaliana
AT5G62580 1.0kb downstream 1.0kb downstream 3664 true Chr5: 25119863-25123526 Arabidopsis thaliana
AT5G62580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25122527-25123526 Arabidopsis thaliana
AT5G62580 2.0kb upstream 2.0kb upstream 4664 true Chr5: 25117863-25122526 Arabidopsis thaliana
AT5G62580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25117863-25119862 Arabidopsis thaliana
AT5G62580 2.0kb downstream 2.0kb downstream 4664 true Chr5: 25119863-25124526 Arabidopsis thaliana
AT5G62580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25122527-25124526 Arabidopsis thaliana
AT5G62580 5.0kb upstream 5.0kb upstream 7664 true Chr5: 25114863-25122526 Arabidopsis thaliana
AT5G62580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25114863-25119862 Arabidopsis thaliana
AT5G62580 5.0kb downstream 5.0kb downstream 7664 true Chr5: 25119863-25127526 Arabidopsis thaliana
AT5G62580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25122527-25127526 Arabidopsis thaliana
AT5G62580 10.0kb upstream 10.0kb upstream 12664 true Chr5: 25109863-25122526 Arabidopsis thaliana
AT5G62580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25109863-25119862 Arabidopsis thaliana
AT5G62580 10.0kb downstream 10.0kb downstream 12664 true Chr5: 25119863-25132526 Arabidopsis thaliana
AT5G62580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25122527-25132526 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041018 5273 Angiosperm View MSA
122374220 5261 Brassicaceae View MSA
123833216 5264 Brassicales-Malvales View MSA
124345883 5266 SBM View MSA
124242441 5268 Malvidae View MSA
124069706 5270 Rosid View MSA
123745990 5271 Pentapetalae View MSA
122793911 5272 Eudicot View MSA
121309785 5274 Embryophyte View MSA
123426800 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.93        
cufflinks 29.506     High  
cufflinks 5.851        
cufflinks 30.248     High  
cufflinks 5.625        
cufflinks 38.62     High High

0 Strain