Gene : AT5G62260 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31500//PTHR31500:SF18 - FAMILY NOT NAMED // AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  5733
Name:  ? AT5G62260 Secondary Identifier:  ? PAC:19665266
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62260 0.5kb upstream 0.5kb upstream 3062 true Chr5: 25008527-25011588 Arabidopsis thaliana
AT5G62260 0.5kb upstream 0.5kb upstream 500 false Chr5: 25008527-25009026 Arabidopsis thaliana
AT5G62260 0.5kb downstream 0.5kb downstream 3062 true Chr5: 25009027-25012088 Arabidopsis thaliana
AT5G62260 0.5kb downstream 0.5kb downstream 500 false Chr5: 25011589-25012088 Arabidopsis thaliana
AT5G62260 1.0kb upstream 1.0kb upstream 3562 true Chr5: 25008027-25011588 Arabidopsis thaliana
AT5G62260 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25008027-25009026 Arabidopsis thaliana
AT5G62260 1.0kb downstream 1.0kb downstream 3562 true Chr5: 25009027-25012588 Arabidopsis thaliana
AT5G62260 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25011589-25012588 Arabidopsis thaliana
AT5G62260 2.0kb upstream 2.0kb upstream 4562 true Chr5: 25007027-25011588 Arabidopsis thaliana
AT5G62260 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25007027-25009026 Arabidopsis thaliana
AT5G62260 2.0kb downstream 2.0kb downstream 4562 true Chr5: 25009027-25013588 Arabidopsis thaliana
AT5G62260 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25011589-25013588 Arabidopsis thaliana
AT5G62260 5.0kb upstream 5.0kb upstream 7562 true Chr5: 25004027-25011588 Arabidopsis thaliana
AT5G62260 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25004027-25009026 Arabidopsis thaliana
AT5G62260 5.0kb downstream 5.0kb downstream 7562 true Chr5: 25009027-25016588 Arabidopsis thaliana
AT5G62260 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25011589-25016588 Arabidopsis thaliana
AT5G62260 10.0kb upstream 10.0kb upstream 12562 true Chr5: 24999027-25011588 Arabidopsis thaliana
AT5G62260 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24999027-25009026 Arabidopsis thaliana
AT5G62260 10.0kb downstream 10.0kb downstream 12562 true Chr5: 25009027-25021588 Arabidopsis thaliana
AT5G62260 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25011589-25021588 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368379 5261 Brassicaceae View MSA
123799558 5264 Brassicales-Malvales View MSA
124297068 5266 SBM View MSA
124251241 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.287        
cufflinks 6.512        
cufflinks 0.25     Low  
cufflinks 8.401        
cufflinks 0.206     Low Low
cufflinks 6.612        

0 Strain