Gene : AT5G62300 A. thaliana TAIR10
Defline:  (1 of 3) K02969 - small subunit ribosomal protein S20e (RP-S20e, RPS20) Genomic Order:  5737
Name:  ? AT5G62300 Secondary Identifier:  ? PAC:19665492
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62300 0.5kb upstream 0.5kb upstream 1737 true Chr5: 25021200-25022936 Arabidopsis thaliana
AT5G62300 0.5kb upstream 0.5kb upstream 500 false Chr5: 25022437-25022936 Arabidopsis thaliana
AT5G62300 0.5kb downstream 0.5kb downstream 1737 true Chr5: 25020700-25022436 Arabidopsis thaliana
AT5G62300 0.5kb downstream 0.5kb downstream 500 false Chr5: 25020700-25021199 Arabidopsis thaliana
AT5G62300 1.0kb upstream 1.0kb upstream 2237 true Chr5: 25021200-25023436 Arabidopsis thaliana
AT5G62300 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25022437-25023436 Arabidopsis thaliana
AT5G62300 1.0kb downstream 1.0kb downstream 2237 true Chr5: 25020200-25022436 Arabidopsis thaliana
AT5G62300 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25020200-25021199 Arabidopsis thaliana
AT5G62300 2.0kb upstream 2.0kb upstream 3237 true Chr5: 25021200-25024436 Arabidopsis thaliana
AT5G62300 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25022437-25024436 Arabidopsis thaliana
AT5G62300 2.0kb downstream 2.0kb downstream 3237 true Chr5: 25019200-25022436 Arabidopsis thaliana
AT5G62300 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25019200-25021199 Arabidopsis thaliana
AT5G62300 5.0kb upstream 5.0kb upstream 6237 true Chr5: 25021200-25027436 Arabidopsis thaliana
AT5G62300 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25022437-25027436 Arabidopsis thaliana
AT5G62300 5.0kb downstream 5.0kb downstream 6237 true Chr5: 25016200-25022436 Arabidopsis thaliana
AT5G62300 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25016200-25021199 Arabidopsis thaliana
AT5G62300 10.0kb upstream 10.0kb upstream 11237 true Chr5: 25021200-25032436 Arabidopsis thaliana
AT5G62300 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25022437-25032436 Arabidopsis thaliana
AT5G62300 10.0kb downstream 10.0kb downstream 11237 true Chr5: 25011200-25022436 Arabidopsis thaliana
AT5G62300 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25011200-25021199 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362485 5261 Brassicaceae View MSA
123837493 5264 Brassicales-Malvales View MSA
124350721 5266 SBM View MSA
124251752 5268 Malvidae View MSA
124068920 5270 Rosid View MSA
123743222 5271 Pentapetalae View MSA
122791885 5272 Eudicot View MSA
122044190 5273 Angiosperm View MSA
121349858 5274 Embryophyte View MSA
123426171 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.802     High  
cufflinks 74.47     High  
cufflinks 44.202     High  
cufflinks 73.252     High  
cufflinks 38.605     High Low
cufflinks 75.42     High  

0 Strain