Gene : AT5G61890 A. thaliana TAIR10
Defline:  (1 of 141) PF00847 - AP2 domain (AP2) Genomic Order:  5694
Name:  ? AT5G61890 Secondary Identifier:  ? PAC:19668047
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61890 0.5kb upstream 0.5kb upstream 1772 true Chr5: 24852639-24854410 Arabidopsis thaliana
AT5G61890 0.5kb upstream 0.5kb upstream 500 false Chr5: 24853911-24854410 Arabidopsis thaliana
AT5G61890 0.5kb downstream 0.5kb downstream 1772 true Chr5: 24852139-24853910 Arabidopsis thaliana
AT5G61890 0.5kb downstream 0.5kb downstream 500 false Chr5: 24852139-24852638 Arabidopsis thaliana
AT5G61890 1.0kb upstream 1.0kb upstream 2272 true Chr5: 24852639-24854910 Arabidopsis thaliana
AT5G61890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24853911-24854910 Arabidopsis thaliana
AT5G61890 1.0kb downstream 1.0kb downstream 2272 true Chr5: 24851639-24853910 Arabidopsis thaliana
AT5G61890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24851639-24852638 Arabidopsis thaliana
AT5G61890 2.0kb upstream 2.0kb upstream 3272 true Chr5: 24852639-24855910 Arabidopsis thaliana
AT5G61890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24853911-24855910 Arabidopsis thaliana
AT5G61890 2.0kb downstream 2.0kb downstream 3272 true Chr5: 24850639-24853910 Arabidopsis thaliana
AT5G61890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24850639-24852638 Arabidopsis thaliana
AT5G61890 5.0kb upstream 5.0kb upstream 6272 true Chr5: 24852639-24858910 Arabidopsis thaliana
AT5G61890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24853911-24858910 Arabidopsis thaliana
AT5G61890 5.0kb downstream 5.0kb downstream 6272 true Chr5: 24847639-24853910 Arabidopsis thaliana
AT5G61890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24847639-24852638 Arabidopsis thaliana
AT5G61890 10.0kb upstream 10.0kb upstream 11272 true Chr5: 24852639-24863910 Arabidopsis thaliana
AT5G61890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24853911-24863910 Arabidopsis thaliana
AT5G61890 10.0kb downstream 10.0kb downstream 11272 true Chr5: 24842639-24853910 Arabidopsis thaliana
AT5G61890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24842639-24852638 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360853 5261 Brassicaceae View MSA
123835494 5264 Brassicales-Malvales View MSA
124336860 5266 SBM View MSA
124250788 5268 Malvidae View MSA
124066336 5270 Rosid View MSA
123738073 5271 Pentapetalae View MSA
122789741 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.33        
cufflinks 0.501        
cufflinks 0.273        
cufflinks 0.798        
cufflinks 0.297        
cufflinks 1.117       High

0 Strain