Gene : AT5G61680 A. thaliana TAIR10
Defline:  (1 of 5) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  5674
Name:  ? AT5G61680 Secondary Identifier:  ? PAC:19673111
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61680 0.5kb upstream 0.5kb upstream 2100 true Chr5: 24786416-24788515 Arabidopsis thaliana
AT5G61680 0.5kb upstream 0.5kb upstream 500 false Chr5: 24788016-24788515 Arabidopsis thaliana
AT5G61680 0.5kb downstream 0.5kb downstream 2100 true Chr5: 24785916-24788015 Arabidopsis thaliana
AT5G61680 0.5kb downstream 0.5kb downstream 500 false Chr5: 24785916-24786415 Arabidopsis thaliana
AT5G61680 1.0kb upstream 1.0kb upstream 2600 true Chr5: 24786416-24789015 Arabidopsis thaliana
AT5G61680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24788016-24789015 Arabidopsis thaliana
AT5G61680 1.0kb downstream 1.0kb downstream 2600 true Chr5: 24785416-24788015 Arabidopsis thaliana
AT5G61680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24785416-24786415 Arabidopsis thaliana
AT5G61680 2.0kb upstream 2.0kb upstream 3600 true Chr5: 24786416-24790015 Arabidopsis thaliana
AT5G61680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24788016-24790015 Arabidopsis thaliana
AT5G61680 2.0kb downstream 2.0kb downstream 3600 true Chr5: 24784416-24788015 Arabidopsis thaliana
AT5G61680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24784416-24786415 Arabidopsis thaliana
AT5G61680 5.0kb upstream 5.0kb upstream 6600 true Chr5: 24786416-24793015 Arabidopsis thaliana
AT5G61680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24788016-24793015 Arabidopsis thaliana
AT5G61680 5.0kb downstream 5.0kb downstream 6600 true Chr5: 24781416-24788015 Arabidopsis thaliana
AT5G61680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24781416-24786415 Arabidopsis thaliana
AT5G61680 10.0kb upstream 10.0kb upstream 11600 true Chr5: 24786416-24798015 Arabidopsis thaliana
AT5G61680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24788016-24798015 Arabidopsis thaliana
AT5G61680 10.0kb downstream 10.0kb downstream 11600 true Chr5: 24776416-24788015 Arabidopsis thaliana
AT5G61680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24776416-24786415 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371294 5261 Brassicaceae View MSA
123836646 5264 Brassicales-Malvales View MSA
124350112 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain