Gene : HDH A. thaliana TAIR10
Primary Identifier:  ? AT5G63890 Defline:  (1 of 1) K00013 - histidinol dehydrogenase (hisD)
Genomic Order:  5903 Name:  ? AT5G63890
Secondary Identifier:  ? PAC:19667289
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana HISTSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G63890 0.5kb upstream 0.5kb upstream 3276 true Chr5: 25565431-25568706 Arabidopsis thaliana
AT5G63890 0.5kb upstream 0.5kb upstream 500 false Chr5: 25568207-25568706 Arabidopsis thaliana
AT5G63890 0.5kb downstream 0.5kb downstream 3276 true Chr5: 25564931-25568206 Arabidopsis thaliana
AT5G63890 0.5kb downstream 0.5kb downstream 500 false Chr5: 25564931-25565430 Arabidopsis thaliana
AT5G63890 1.0kb upstream 1.0kb upstream 3776 true Chr5: 25565431-25569206 Arabidopsis thaliana
AT5G63890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25568207-25569206 Arabidopsis thaliana
AT5G63890 1.0kb downstream 1.0kb downstream 3776 true Chr5: 25564431-25568206 Arabidopsis thaliana
AT5G63890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25564431-25565430 Arabidopsis thaliana
AT5G63890 2.0kb upstream 2.0kb upstream 4776 true Chr5: 25565431-25570206 Arabidopsis thaliana
AT5G63890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25568207-25570206 Arabidopsis thaliana
AT5G63890 2.0kb downstream 2.0kb downstream 4776 true Chr5: 25563431-25568206 Arabidopsis thaliana
AT5G63890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25563431-25565430 Arabidopsis thaliana
AT5G63890 5.0kb upstream 5.0kb upstream 7776 true Chr5: 25565431-25573206 Arabidopsis thaliana
AT5G63890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25568207-25573206 Arabidopsis thaliana
AT5G63890 5.0kb downstream 5.0kb downstream 7776 true Chr5: 25560431-25568206 Arabidopsis thaliana
AT5G63890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25560431-25565430 Arabidopsis thaliana
AT5G63890 10.0kb upstream 10.0kb upstream 12776 true Chr5: 25565431-25578206 Arabidopsis thaliana
AT5G63890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25568207-25578206 Arabidopsis thaliana
AT5G63890 10.0kb downstream 10.0kb downstream 12776 true Chr5: 25555431-25568206 Arabidopsis thaliana
AT5G63890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25555431-25565430 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369392 5261 Brassicaceae View MSA
123839930 5264 Brassicales-Malvales View MSA
124340813 5266 SBM View MSA
124241188 5268 Malvidae View MSA
124061664 5270 Rosid View MSA
123738837 5271 Pentapetalae View MSA
122785994 5272 Eudicot View MSA
122046994 5273 Angiosperm View MSA
121351553 5274 Embryophyte View MSA
123424167 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.762       High
cufflinks 7.049       Low
cufflinks 12.233        
cufflinks 7.334        
cufflinks 11.649        
cufflinks 8.138        

0 Strain