Gene : HDA6 A. thaliana TAIR10
Primary Identifier:  ? AT5G63110 Defline:  (1 of 2) PTHR10625//PTHR10625:SF109 - HISTONE DEACETYLASE // HISTONE DEACETYLASE 2
Genomic Order:  5825 Name:  ? AT5G63110
Secondary Identifier:  ? PAC:19669064
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0 Pathways

Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G63110 0.5kb upstream 0.5kb upstream 3224 true Chr5: 25315624-25318847 Arabidopsis thaliana
AT5G63110 0.5kb upstream 0.5kb upstream 500 false Chr5: 25318348-25318847 Arabidopsis thaliana
AT5G63110 0.5kb downstream 0.5kb downstream 3224 true Chr5: 25315124-25318347 Arabidopsis thaliana
AT5G63110 0.5kb downstream 0.5kb downstream 500 false Chr5: 25315124-25315623 Arabidopsis thaliana
AT5G63110 1.0kb upstream 1.0kb upstream 3724 true Chr5: 25315624-25319347 Arabidopsis thaliana
AT5G63110 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25318348-25319347 Arabidopsis thaliana
AT5G63110 1.0kb downstream 1.0kb downstream 3724 true Chr5: 25314624-25318347 Arabidopsis thaliana
AT5G63110 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25314624-25315623 Arabidopsis thaliana
AT5G63110 2.0kb upstream 2.0kb upstream 4724 true Chr5: 25315624-25320347 Arabidopsis thaliana
AT5G63110 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25318348-25320347 Arabidopsis thaliana
AT5G63110 2.0kb downstream 2.0kb downstream 4724 true Chr5: 25313624-25318347 Arabidopsis thaliana
AT5G63110 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25313624-25315623 Arabidopsis thaliana
AT5G63110 5.0kb upstream 5.0kb upstream 7724 true Chr5: 25315624-25323347 Arabidopsis thaliana
AT5G63110 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25318348-25323347 Arabidopsis thaliana
AT5G63110 5.0kb downstream 5.0kb downstream 7724 true Chr5: 25310624-25318347 Arabidopsis thaliana
AT5G63110 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25310624-25315623 Arabidopsis thaliana
AT5G63110 10.0kb upstream 10.0kb upstream 12724 true Chr5: 25315624-25328347 Arabidopsis thaliana
AT5G63110 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25318348-25328347 Arabidopsis thaliana
AT5G63110 10.0kb downstream 10.0kb downstream 12724 true Chr5: 25305624-25318347 Arabidopsis thaliana
AT5G63110 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25305624-25315623 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362858 5261 Brassicaceae View MSA
123834309 5264 Brassicales-Malvales View MSA
124338395 5266 SBM View MSA
124239133 5268 Malvidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.545        
cufflinks 12.885        
cufflinks 7.321       Low
cufflinks 13.069        
cufflinks 8.921        
cufflinks 12.85        

0 Strain