Gene : ATCG00680 A. thaliana TAIR10
Defline:  (1 of 1) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB) Genomic Order:  47
Name:  ? ATCG00680 Secondary Identifier:  ? PAC:19637991
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-101 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00680 0.5kb upstream 0.5kb upstream 2027 true ChrC: 71871-73897 Arabidopsis thaliana
ATCG00680 0.5kb upstream 0.5kb upstream 500 false ChrC: 71871-72370 Arabidopsis thaliana
ATCG00680 0.5kb downstream 0.5kb downstream 2027 true ChrC: 72371-74397 Arabidopsis thaliana
ATCG00680 0.5kb downstream 0.5kb downstream 500 false ChrC: 73898-74397 Arabidopsis thaliana
ATCG00680 1.0kb upstream 1.0kb upstream 2527 true ChrC: 71371-73897 Arabidopsis thaliana
ATCG00680 1.0kb upstream 1.0kb upstream 1000 false ChrC: 71371-72370 Arabidopsis thaliana
ATCG00680 1.0kb downstream 1.0kb downstream 2527 true ChrC: 72371-74897 Arabidopsis thaliana
ATCG00680 1.0kb downstream 1.0kb downstream 1000 false ChrC: 73898-74897 Arabidopsis thaliana
ATCG00680 2.0kb upstream 2.0kb upstream 3527 true ChrC: 70371-73897 Arabidopsis thaliana
ATCG00680 2.0kb upstream 2.0kb upstream 2000 false ChrC: 70371-72370 Arabidopsis thaliana
ATCG00680 2.0kb downstream 2.0kb downstream 3527 true ChrC: 72371-75897 Arabidopsis thaliana
ATCG00680 2.0kb downstream 2.0kb downstream 2000 false ChrC: 73898-75897 Arabidopsis thaliana
ATCG00680 5.0kb upstream 5.0kb upstream 6527 true ChrC: 67371-73897 Arabidopsis thaliana
ATCG00680 5.0kb upstream 5.0kb upstream 5000 false ChrC: 67371-72370 Arabidopsis thaliana
ATCG00680 5.0kb downstream 5.0kb downstream 6527 true ChrC: 72371-78897 Arabidopsis thaliana
ATCG00680 5.0kb downstream 5.0kb downstream 5000 false ChrC: 73898-78897 Arabidopsis thaliana
ATCG00680 10.0kb upstream 10.0kb upstream 11527 true ChrC: 62371-73897 Arabidopsis thaliana
ATCG00680 10.0kb upstream 10.0kb upstream 10000 false ChrC: 62371-72370 Arabidopsis thaliana
ATCG00680 10.0kb downstream 10.0kb downstream 11527 true ChrC: 72371-83897 Arabidopsis thaliana
ATCG00680 10.0kb downstream 10.0kb downstream 10000 false ChrC: 73898-83897 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331898 5261 Brassicaceae View MSA
123829255 5264 Brassicales-Malvales View MSA
124321586 5266 SBM View MSA
124244741 5268 Malvidae View MSA
124039220 5270 Rosid View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.02     High  
cufflinks 1.067       Low
cufflinks 125.669     High High
cufflinks 0.933       Low
cufflinks 24.175        
cufflinks 3.767        

0 Strain