Gene : ATCG00080 A. thaliana TAIR10
Defline:  (1 of 1) K02710 - photosystem II PsbI protein (psbI) Genomic Order:  5
Name:  ? ATCG00080 Secondary Identifier:  ? PAC:19637976
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00080 0.5kb upstream 0.5kb upstream 611 true ChrC: 7083-7693 Arabidopsis thaliana
ATCG00080 0.5kb upstream 0.5kb upstream 500 false ChrC: 7083-7582 Arabidopsis thaliana
ATCG00080 0.5kb downstream 0.5kb downstream 611 true ChrC: 7583-8193 Arabidopsis thaliana
ATCG00080 0.5kb downstream 0.5kb downstream 500 false ChrC: 7694-8193 Arabidopsis thaliana
ATCG00080 1.0kb upstream 1.0kb upstream 1111 true ChrC: 6583-7693 Arabidopsis thaliana
ATCG00080 1.0kb upstream 1.0kb upstream 1000 false ChrC: 6583-7582 Arabidopsis thaliana
ATCG00080 1.0kb downstream 1.0kb downstream 1111 true ChrC: 7583-8693 Arabidopsis thaliana
ATCG00080 1.0kb downstream 1.0kb downstream 1000 false ChrC: 7694-8693 Arabidopsis thaliana
ATCG00080 2.0kb upstream 2.0kb upstream 2111 true ChrC: 5583-7693 Arabidopsis thaliana
ATCG00080 2.0kb upstream 2.0kb upstream 2000 false ChrC: 5583-7582 Arabidopsis thaliana
ATCG00080 2.0kb downstream 2.0kb downstream 2111 true ChrC: 7583-9693 Arabidopsis thaliana
ATCG00080 2.0kb downstream 2.0kb downstream 2000 false ChrC: 7694-9693 Arabidopsis thaliana
ATCG00080 5.0kb upstream 5.0kb upstream 5111 true ChrC: 2583-7693 Arabidopsis thaliana
ATCG00080 5.0kb upstream 5.0kb upstream 5000 false ChrC: 2583-7582 Arabidopsis thaliana
ATCG00080 5.0kb downstream 5.0kb downstream 5111 true ChrC: 7583-12693 Arabidopsis thaliana
ATCG00080 5.0kb downstream 5.0kb downstream 5000 false ChrC: 7694-12693 Arabidopsis thaliana
ATCG00080 10.0kb upstream 10.0kb upstream 7693 true ChrC: 1-7693 Arabidopsis thaliana
ATCG00080 10.0kb upstream 10.0kb upstream 7582 false ChrC: 1-7582 Arabidopsis thaliana
ATCG00080 10.0kb downstream 10.0kb downstream 10111 true ChrC: 7583-17693 Arabidopsis thaliana
ATCG00080 10.0kb downstream 10.0kb downstream 10000 false ChrC: 7694-17693 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027846 5273 Angiosperm View MSA
122331768 5261 Brassicaceae View MSA
123836034 5264 Brassicales-Malvales View MSA
124322124 5266 SBM View MSA
124245181 5268 Malvidae View MSA
123952041 5270 Rosid View MSA
123529973 5271 Pentapetalae View MSA
122790254 5272 Eudicot View MSA
121345076 5274 Embryophyte View MSA
123380148 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.913     High  
cufflinks 3.4        
cufflinks 174.348     High High
cufflinks 3.636        
cufflinks 30.885     High  
cufflinks 4.069        

0 Strain