Gene : ATCG00280 A. thaliana TAIR10
Defline:  (1 of 1) K02705 - photosystem II CP43 chlorophyll apoprotein (psbC) Genomic Order:  17
Name:  ? ATCG00280 Secondary Identifier:  ? PAC:19637949
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00280 0.5kb upstream 0.5kb upstream 1922 true ChrC: 33220-35141 Arabidopsis thaliana
ATCG00280 0.5kb upstream 0.5kb upstream 500 false ChrC: 33220-33719 Arabidopsis thaliana
ATCG00280 0.5kb downstream 0.5kb downstream 1922 true ChrC: 33720-35641 Arabidopsis thaliana
ATCG00280 0.5kb downstream 0.5kb downstream 500 false ChrC: 35142-35641 Arabidopsis thaliana
ATCG00280 1.0kb upstream 1.0kb upstream 2422 true ChrC: 32720-35141 Arabidopsis thaliana
ATCG00280 1.0kb upstream 1.0kb upstream 1000 false ChrC: 32720-33719 Arabidopsis thaliana
ATCG00280 1.0kb downstream 1.0kb downstream 2422 true ChrC: 33720-36141 Arabidopsis thaliana
ATCG00280 1.0kb downstream 1.0kb downstream 1000 false ChrC: 35142-36141 Arabidopsis thaliana
ATCG00280 2.0kb upstream 2.0kb upstream 3422 true ChrC: 31720-35141 Arabidopsis thaliana
ATCG00280 2.0kb upstream 2.0kb upstream 2000 false ChrC: 31720-33719 Arabidopsis thaliana
ATCG00280 2.0kb downstream 2.0kb downstream 3422 true ChrC: 33720-37141 Arabidopsis thaliana
ATCG00280 2.0kb downstream 2.0kb downstream 2000 false ChrC: 35142-37141 Arabidopsis thaliana
ATCG00280 5.0kb upstream 5.0kb upstream 6422 true ChrC: 28720-35141 Arabidopsis thaliana
ATCG00280 5.0kb upstream 5.0kb upstream 5000 false ChrC: 28720-33719 Arabidopsis thaliana
ATCG00280 5.0kb downstream 5.0kb downstream 6422 true ChrC: 33720-40141 Arabidopsis thaliana
ATCG00280 5.0kb downstream 5.0kb downstream 5000 false ChrC: 35142-40141 Arabidopsis thaliana
ATCG00280 10.0kb upstream 10.0kb upstream 11422 true ChrC: 23720-35141 Arabidopsis thaliana
ATCG00280 10.0kb upstream 10.0kb upstream 10000 false ChrC: 23720-33719 Arabidopsis thaliana
ATCG00280 10.0kb downstream 10.0kb downstream 11422 true ChrC: 33720-45141 Arabidopsis thaliana
ATCG00280 10.0kb downstream 10.0kb downstream 10000 false ChrC: 35142-45141 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331953 5261 Brassicaceae View MSA
123828729 5264 Brassicales-Malvales View MSA
124321552 5266 SBM View MSA
124248141 5268 Malvidae View MSA
124038128 5270 Rosid View MSA
123751197 5271 Pentapetalae View MSA
122773946 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.637     High  
cufflinks 0.906       Low
cufflinks 154.269     High High
cufflinks 1.091        
cufflinks 30.266     High  
cufflinks 2.632        

0 Strain