Gene : ATMG00300 A. thaliana TAIR10
Defline:  (1 of 1) PF13976 - GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  26
Name:  ? ATMG00300 Secondary Identifier:  ? PAC:19643676
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATMG00300 0.5kb upstream 0.5kb upstream 938 true ChrM: 89617-90554 Arabidopsis thaliana
ATMG00300 0.5kb upstream 0.5kb upstream 500 false ChrM: 90055-90554 Arabidopsis thaliana
ATMG00300 0.5kb downstream 0.5kb downstream 938 true ChrM: 89117-90054 Arabidopsis thaliana
ATMG00300 0.5kb downstream 0.5kb downstream 500 false ChrM: 89117-89616 Arabidopsis thaliana
ATMG00300 1.0kb upstream 1.0kb upstream 1438 true ChrM: 89617-91054 Arabidopsis thaliana
ATMG00300 1.0kb upstream 1.0kb upstream 1000 false ChrM: 90055-91054 Arabidopsis thaliana
ATMG00300 1.0kb downstream 1.0kb downstream 1438 true ChrM: 88617-90054 Arabidopsis thaliana
ATMG00300 1.0kb downstream 1.0kb downstream 1000 false ChrM: 88617-89616 Arabidopsis thaliana
ATMG00300 2.0kb upstream 2.0kb upstream 2438 true ChrM: 89617-92054 Arabidopsis thaliana
ATMG00300 2.0kb upstream 2.0kb upstream 2000 false ChrM: 90055-92054 Arabidopsis thaliana
ATMG00300 2.0kb downstream 2.0kb downstream 2438 true ChrM: 87617-90054 Arabidopsis thaliana
ATMG00300 2.0kb downstream 2.0kb downstream 2000 false ChrM: 87617-89616 Arabidopsis thaliana
ATMG00300 5.0kb upstream 5.0kb upstream 5438 true ChrM: 89617-95054 Arabidopsis thaliana
ATMG00300 5.0kb upstream 5.0kb upstream 5000 false ChrM: 90055-95054 Arabidopsis thaliana
ATMG00300 5.0kb downstream 5.0kb downstream 5438 true ChrM: 84617-90054 Arabidopsis thaliana
ATMG00300 5.0kb downstream 5.0kb downstream 5000 false ChrM: 84617-89616 Arabidopsis thaliana
ATMG00300 10.0kb upstream 10.0kb upstream 10438 true ChrM: 89617-100054 Arabidopsis thaliana
ATMG00300 10.0kb upstream 10.0kb upstream 10000 false ChrM: 90055-100054 Arabidopsis thaliana
ATMG00300 10.0kb downstream 10.0kb downstream 10438 true ChrM: 79617-90054 Arabidopsis thaliana
ATMG00300 10.0kb downstream 10.0kb downstream 10000 false ChrM: 79617-89616 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331580 5261 Brassicaceae Singleton cluster - no MSA
123772743 5264 Brassicales-Malvales Singleton cluster - no MSA
124271250 5266 SBM Singleton cluster - no MSA
124127250 5268 Malvidae Singleton cluster - no MSA
123856116 5270 Rosid Singleton cluster - no MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain