Gene : AT3G08620 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11208//PTHR11208:SF59 - RNA-BINDING PROTEIN RELATED // SUBFAMILY NOT NAMED Genomic Order:  810
Name:  ? AT3G08620 Secondary Identifier:  ? PAC:19659857
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G08620 0.5kb upstream 0.5kb upstream 3306 true Chr3: 2617268-2620573 Arabidopsis thaliana
AT3G08620 0.5kb upstream 0.5kb upstream 500 false Chr3: 2617268-2617767 Arabidopsis thaliana
AT3G08620 0.5kb downstream 0.5kb downstream 3306 true Chr3: 2617768-2621073 Arabidopsis thaliana
AT3G08620 0.5kb downstream 0.5kb downstream 500 false Chr3: 2620574-2621073 Arabidopsis thaliana
AT3G08620 1.0kb upstream 1.0kb upstream 3806 true Chr3: 2616768-2620573 Arabidopsis thaliana
AT3G08620 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2616768-2617767 Arabidopsis thaliana
AT3G08620 1.0kb downstream 1.0kb downstream 3806 true Chr3: 2617768-2621573 Arabidopsis thaliana
AT3G08620 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2620574-2621573 Arabidopsis thaliana
AT3G08620 2.0kb upstream 2.0kb upstream 4806 true Chr3: 2615768-2620573 Arabidopsis thaliana
AT3G08620 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2615768-2617767 Arabidopsis thaliana
AT3G08620 2.0kb downstream 2.0kb downstream 4806 true Chr3: 2617768-2622573 Arabidopsis thaliana
AT3G08620 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2620574-2622573 Arabidopsis thaliana
AT3G08620 5.0kb upstream 5.0kb upstream 7806 true Chr3: 2612768-2620573 Arabidopsis thaliana
AT3G08620 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2612768-2617767 Arabidopsis thaliana
AT3G08620 5.0kb downstream 5.0kb downstream 7806 true Chr3: 2617768-2625573 Arabidopsis thaliana
AT3G08620 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2620574-2625573 Arabidopsis thaliana
AT3G08620 10.0kb upstream 10.0kb upstream 12806 true Chr3: 2607768-2620573 Arabidopsis thaliana
AT3G08620 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2607768-2617767 Arabidopsis thaliana
AT3G08620 10.0kb downstream 10.0kb downstream 12806 true Chr3: 2617768-2630573 Arabidopsis thaliana
AT3G08620 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2620574-2630573 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370714 5261 Brassicaceae View MSA
123836230 5264 Brassicales-Malvales View MSA
124337389 5266 SBM View MSA
124240023 5268 Malvidae View MSA
124074646 5270 Rosid View MSA
123752463 5271 Pentapetalae View MSA
122791052 5272 Eudicot View MSA
122045750 5273 Angiosperm View MSA
121350686 5274 Embryophyte View MSA
123426021 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.747        
cufflinks 4.604        
cufflinks 2.468        
cufflinks 4.889        
cufflinks 2.308       Low
cufflinks 4.754        

0 Strain