Gene : AT3G08530 A. thaliana TAIR10
Defline:  (1 of 2) K04646 - clathrin heavy chain (CLTC) Genomic Order:  802
Name:  ? AT3G08530 Secondary Identifier:  ? PAC:19658604
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G08530 0.5kb upstream 0.5kb upstream 9267 true Chr3: 2586806-2596072 Arabidopsis thaliana
AT3G08530 0.5kb upstream 0.5kb upstream 500 false Chr3: 2595573-2596072 Arabidopsis thaliana
AT3G08530 0.5kb downstream 0.5kb downstream 9267 true Chr3: 2586306-2595572 Arabidopsis thaliana
AT3G08530 0.5kb downstream 0.5kb downstream 500 false Chr3: 2586306-2586805 Arabidopsis thaliana
AT3G08530 1.0kb upstream 1.0kb upstream 9767 true Chr3: 2586806-2596572 Arabidopsis thaliana
AT3G08530 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2595573-2596572 Arabidopsis thaliana
AT3G08530 1.0kb downstream 1.0kb downstream 9767 true Chr3: 2585806-2595572 Arabidopsis thaliana
AT3G08530 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2585806-2586805 Arabidopsis thaliana
AT3G08530 2.0kb upstream 2.0kb upstream 10767 true Chr3: 2586806-2597572 Arabidopsis thaliana
AT3G08530 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2595573-2597572 Arabidopsis thaliana
AT3G08530 2.0kb downstream 2.0kb downstream 10767 true Chr3: 2584806-2595572 Arabidopsis thaliana
AT3G08530 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2584806-2586805 Arabidopsis thaliana
AT3G08530 5.0kb upstream 5.0kb upstream 13767 true Chr3: 2586806-2600572 Arabidopsis thaliana
AT3G08530 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2595573-2600572 Arabidopsis thaliana
AT3G08530 5.0kb downstream 5.0kb downstream 13767 true Chr3: 2581806-2595572 Arabidopsis thaliana
AT3G08530 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2581806-2586805 Arabidopsis thaliana
AT3G08530 10.0kb upstream 10.0kb upstream 18767 true Chr3: 2586806-2605572 Arabidopsis thaliana
AT3G08530 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2595573-2605572 Arabidopsis thaliana
AT3G08530 10.0kb downstream 10.0kb downstream 18767 true Chr3: 2576806-2595572 Arabidopsis thaliana
AT3G08530 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2576806-2586805 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027117 5273 Angiosperm View MSA
122379278 5261 Brassicaceae View MSA
123839262 5264 Brassicales-Malvales View MSA
124344477 5266 SBM View MSA
124236838 5268 Malvidae View MSA
124064401 5270 Rosid View MSA
123744166 5271 Pentapetalae View MSA
122788856 5272 Eudicot View MSA
121350817 5274 Embryophyte View MSA
123428843 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.537     High  
cufflinks 52.658     High  
cufflinks 34.187     High Low
cufflinks 58.86     High  
cufflinks 36.229     High  
cufflinks 62.157     High High

0 Strain