Gene : AT3G07850 A. thaliana TAIR10
Defline:  (1 of 3) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Genomic Order:  777
Name:  ? AT3G07850 Secondary Identifier:  ? PAC:19660579
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07850 0.5kb upstream 0.5kb upstream 2482 true Chr3: 2505547-2508028 Arabidopsis thaliana
AT3G07850 0.5kb upstream 0.5kb upstream 500 false Chr3: 2507529-2508028 Arabidopsis thaliana
AT3G07850 0.5kb downstream 0.5kb downstream 2482 true Chr3: 2505047-2507528 Arabidopsis thaliana
AT3G07850 0.5kb downstream 0.5kb downstream 500 false Chr3: 2505047-2505546 Arabidopsis thaliana
AT3G07850 1.0kb upstream 1.0kb upstream 2982 true Chr3: 2505547-2508528 Arabidopsis thaliana
AT3G07850 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2507529-2508528 Arabidopsis thaliana
AT3G07850 1.0kb downstream 1.0kb downstream 2982 true Chr3: 2504547-2507528 Arabidopsis thaliana
AT3G07850 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2504547-2505546 Arabidopsis thaliana
AT3G07850 2.0kb upstream 2.0kb upstream 3982 true Chr3: 2505547-2509528 Arabidopsis thaliana
AT3G07850 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2507529-2509528 Arabidopsis thaliana
AT3G07850 2.0kb downstream 2.0kb downstream 3982 true Chr3: 2503547-2507528 Arabidopsis thaliana
AT3G07850 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2503547-2505546 Arabidopsis thaliana
AT3G07850 5.0kb upstream 5.0kb upstream 6982 true Chr3: 2505547-2512528 Arabidopsis thaliana
AT3G07850 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2507529-2512528 Arabidopsis thaliana
AT3G07850 5.0kb downstream 5.0kb downstream 6982 true Chr3: 2500547-2507528 Arabidopsis thaliana
AT3G07850 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2500547-2505546 Arabidopsis thaliana
AT3G07850 10.0kb upstream 10.0kb upstream 11982 true Chr3: 2505547-2517528 Arabidopsis thaliana
AT3G07850 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2507529-2517528 Arabidopsis thaliana
AT3G07850 10.0kb downstream 10.0kb downstream 11982 true Chr3: 2495547-2507528 Arabidopsis thaliana
AT3G07850 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2495547-2505546 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377836 5261 Brassicaceae View MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain