Gene : AT3G06880 A. thaliana TAIR10
Defline:  (1 of 1) PTHR19850:SF33 - TRANSDUCIN/WD-40 REPEAT-CONTAINING PROTEIN Genomic Order:  674
Name:  ? AT3G06880 Secondary Identifier:  ? PAC:19660353
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06880 0.5kb upstream 0.5kb upstream 6419 true Chr3: 2169768-2176186 Arabidopsis thaliana
AT3G06880 0.5kb upstream 0.5kb upstream 500 false Chr3: 2175687-2176186 Arabidopsis thaliana
AT3G06880 0.5kb downstream 0.5kb downstream 6419 true Chr3: 2169268-2175686 Arabidopsis thaliana
AT3G06880 0.5kb downstream 0.5kb downstream 500 false Chr3: 2169268-2169767 Arabidopsis thaliana
AT3G06880 1.0kb upstream 1.0kb upstream 6919 true Chr3: 2169768-2176686 Arabidopsis thaliana
AT3G06880 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2175687-2176686 Arabidopsis thaliana
AT3G06880 1.0kb downstream 1.0kb downstream 6919 true Chr3: 2168768-2175686 Arabidopsis thaliana
AT3G06880 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2168768-2169767 Arabidopsis thaliana
AT3G06880 2.0kb upstream 2.0kb upstream 7919 true Chr3: 2169768-2177686 Arabidopsis thaliana
AT3G06880 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2175687-2177686 Arabidopsis thaliana
AT3G06880 2.0kb downstream 2.0kb downstream 7919 true Chr3: 2167768-2175686 Arabidopsis thaliana
AT3G06880 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2167768-2169767 Arabidopsis thaliana
AT3G06880 5.0kb upstream 5.0kb upstream 10919 true Chr3: 2169768-2180686 Arabidopsis thaliana
AT3G06880 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2175687-2180686 Arabidopsis thaliana
AT3G06880 5.0kb downstream 5.0kb downstream 10919 true Chr3: 2164768-2175686 Arabidopsis thaliana
AT3G06880 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2164768-2169767 Arabidopsis thaliana
AT3G06880 10.0kb upstream 10.0kb upstream 15919 true Chr3: 2169768-2185686 Arabidopsis thaliana
AT3G06880 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2175687-2185686 Arabidopsis thaliana
AT3G06880 10.0kb downstream 10.0kb downstream 15919 true Chr3: 2159768-2175686 Arabidopsis thaliana
AT3G06880 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2159768-2169767 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369749 5261 Brassicaceae View MSA
123834049 5264 Brassicales-Malvales View MSA
124344178 5266 SBM View MSA
124245305 5268 Malvidae View MSA
124069728 5270 Rosid View MSA
123741699 5271 Pentapetalae View MSA
122795332 5272 Eudicot View MSA
122049229 5273 Angiosperm View MSA
121348338 5274 Embryophyte View MSA
123380824 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.184       High
cufflinks 1.707        
cufflinks 6.082       High
cufflinks 1.621       Low
cufflinks 3.315        
cufflinks 2.149        

0 Strain