Gene : AT3G13224 A. thaliana TAIR10
Defline:  (1 of 1) KOG0131//KOG4205 - Splicing factor 3b, subunit 4 // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 Genomic Order:  1313
Name:  ? AT3G13224 Secondary Identifier:  ? PAC:19662976
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13224 0.5kb upstream 0.5kb upstream 3167 true Chr3: 4254243-4257409 Arabidopsis thaliana
AT3G13224 0.5kb upstream 0.5kb upstream 500 false Chr3: 4254243-4254742 Arabidopsis thaliana
AT3G13224 0.5kb downstream 0.5kb downstream 3167 true Chr3: 4254743-4257909 Arabidopsis thaliana
AT3G13224 0.5kb downstream 0.5kb downstream 500 false Chr3: 4257410-4257909 Arabidopsis thaliana
AT3G13224 1.0kb upstream 1.0kb upstream 3667 true Chr3: 4253743-4257409 Arabidopsis thaliana
AT3G13224 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4253743-4254742 Arabidopsis thaliana
AT3G13224 1.0kb downstream 1.0kb downstream 3667 true Chr3: 4254743-4258409 Arabidopsis thaliana
AT3G13224 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4257410-4258409 Arabidopsis thaliana
AT3G13224 2.0kb upstream 2.0kb upstream 4667 true Chr3: 4252743-4257409 Arabidopsis thaliana
AT3G13224 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4252743-4254742 Arabidopsis thaliana
AT3G13224 2.0kb downstream 2.0kb downstream 4667 true Chr3: 4254743-4259409 Arabidopsis thaliana
AT3G13224 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4257410-4259409 Arabidopsis thaliana
AT3G13224 5.0kb upstream 5.0kb upstream 7667 true Chr3: 4249743-4257409 Arabidopsis thaliana
AT3G13224 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4249743-4254742 Arabidopsis thaliana
AT3G13224 5.0kb downstream 5.0kb downstream 7667 true Chr3: 4254743-4262409 Arabidopsis thaliana
AT3G13224 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4257410-4262409 Arabidopsis thaliana
AT3G13224 10.0kb upstream 10.0kb upstream 12667 true Chr3: 4244743-4257409 Arabidopsis thaliana
AT3G13224 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4244743-4254742 Arabidopsis thaliana
AT3G13224 10.0kb downstream 10.0kb downstream 12667 true Chr3: 4254743-4267409 Arabidopsis thaliana
AT3G13224 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4257410-4267409 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372270 5261 Brassicaceae View MSA
123836088 5264 Brassicales-Malvales View MSA
124322130 5266 SBM View MSA
124252453 5268 Malvidae View MSA
124068124 5270 Rosid View MSA
123749875 5271 Pentapetalae View MSA
122795873 5272 Eudicot View MSA
122049849 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.731        
cufflinks 8.701        
cufflinks 3.883       Low
cufflinks 9.235       High
cufflinks 3.841       Low
cufflinks 8.437        

0 Strain