Gene : TRFL9 A. thaliana TAIR10
Primary Identifier:  ? AT3G12560 Defline:  (1 of 6) PTHR21717:SF9 - PROTEIN TBF1
Genomic Order:  1236 Name:  ? AT3G12560
Secondary Identifier:  ? PAC:19664592
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12560 0.5kb upstream 0.5kb upstream 4068 true Chr3: 3981983-3986050 Arabidopsis thaliana
AT3G12560 0.5kb upstream 0.5kb upstream 500 false Chr3: 3985551-3986050 Arabidopsis thaliana
AT3G12560 0.5kb downstream 0.5kb downstream 4068 true Chr3: 3981483-3985550 Arabidopsis thaliana
AT3G12560 0.5kb downstream 0.5kb downstream 500 false Chr3: 3981483-3981982 Arabidopsis thaliana
AT3G12560 1.0kb upstream 1.0kb upstream 4568 true Chr3: 3981983-3986550 Arabidopsis thaliana
AT3G12560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3985551-3986550 Arabidopsis thaliana
AT3G12560 1.0kb downstream 1.0kb downstream 4568 true Chr3: 3980983-3985550 Arabidopsis thaliana
AT3G12560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3980983-3981982 Arabidopsis thaliana
AT3G12560 2.0kb upstream 2.0kb upstream 5568 true Chr3: 3981983-3987550 Arabidopsis thaliana
AT3G12560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3985551-3987550 Arabidopsis thaliana
AT3G12560 2.0kb downstream 2.0kb downstream 5568 true Chr3: 3979983-3985550 Arabidopsis thaliana
AT3G12560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3979983-3981982 Arabidopsis thaliana
AT3G12560 5.0kb upstream 5.0kb upstream 8568 true Chr3: 3981983-3990550 Arabidopsis thaliana
AT3G12560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3985551-3990550 Arabidopsis thaliana
AT3G12560 5.0kb downstream 5.0kb downstream 8568 true Chr3: 3976983-3985550 Arabidopsis thaliana
AT3G12560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3976983-3981982 Arabidopsis thaliana
AT3G12560 10.0kb upstream 10.0kb upstream 13568 true Chr3: 3981983-3995550 Arabidopsis thaliana
AT3G12560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3985551-3995550 Arabidopsis thaliana
AT3G12560 10.0kb downstream 10.0kb downstream 13568 true Chr3: 3971983-3985550 Arabidopsis thaliana
AT3G12560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3971983-3981982 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376232 5261 Brassicaceae View MSA
123836726 5264 Brassicales-Malvales View MSA
124337618 5266 SBM View MSA
124244981 5268 Malvidae View MSA
124064371 5270 Rosid View MSA
123753061 5271 Pentapetalae View MSA
122788041 5272 Eudicot View MSA
122049318 5273 Angiosperm View MSA
123429070 5275 Viridiplantae View MSA
121348439 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.308       High
cufflinks 10.377        
cufflinks 11.078        
cufflinks 13.345        
cufflinks 8.841       Low
cufflinks 11.817        

0 Strain