Gene : AT3G12260 A. thaliana TAIR10
Defline:  (1 of 1) K03950 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 (NDUFA6) Genomic Order:  1207
Name:  ? AT3G12260 Secondary Identifier:  ? PAC:19659815
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5083 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12260 0.5kb upstream 0.5kb upstream 1981 true Chr3: 3908940-3910920 Arabidopsis thaliana
AT3G12260 0.5kb upstream 0.5kb upstream 500 false Chr3: 3910421-3910920 Arabidopsis thaliana
AT3G12260 0.5kb downstream 0.5kb downstream 1981 true Chr3: 3908440-3910420 Arabidopsis thaliana
AT3G12260 0.5kb downstream 0.5kb downstream 500 false Chr3: 3908440-3908939 Arabidopsis thaliana
AT3G12260 1.0kb upstream 1.0kb upstream 2481 true Chr3: 3908940-3911420 Arabidopsis thaliana
AT3G12260 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3910421-3911420 Arabidopsis thaliana
AT3G12260 1.0kb downstream 1.0kb downstream 2481 true Chr3: 3907940-3910420 Arabidopsis thaliana
AT3G12260 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3907940-3908939 Arabidopsis thaliana
AT3G12260 2.0kb upstream 2.0kb upstream 3481 true Chr3: 3908940-3912420 Arabidopsis thaliana
AT3G12260 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3910421-3912420 Arabidopsis thaliana
AT3G12260 2.0kb downstream 2.0kb downstream 3481 true Chr3: 3906940-3910420 Arabidopsis thaliana
AT3G12260 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3906940-3908939 Arabidopsis thaliana
AT3G12260 5.0kb upstream 5.0kb upstream 6481 true Chr3: 3908940-3915420 Arabidopsis thaliana
AT3G12260 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3910421-3915420 Arabidopsis thaliana
AT3G12260 5.0kb downstream 5.0kb downstream 6481 true Chr3: 3903940-3910420 Arabidopsis thaliana
AT3G12260 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3903940-3908939 Arabidopsis thaliana
AT3G12260 10.0kb upstream 10.0kb upstream 11481 true Chr3: 3908940-3920420 Arabidopsis thaliana
AT3G12260 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3910421-3920420 Arabidopsis thaliana
AT3G12260 10.0kb downstream 10.0kb downstream 11481 true Chr3: 3898940-3910420 Arabidopsis thaliana
AT3G12260 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3898940-3908939 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041345 5273 Angiosperm View MSA
122376963 5261 Brassicaceae View MSA
123831504 5264 Brassicales-Malvales View MSA
124343187 5266 SBM View MSA
124239570 5268 Malvidae View MSA
124060660 5270 Rosid View MSA
123740725 5271 Pentapetalae View MSA
122787479 5272 Eudicot View MSA
121345950 5274 Embryophyte View MSA
123424820 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.41     High  
cufflinks 37.664     High Low
cufflinks 40.911     High  
cufflinks 40.47     High  
cufflinks 45.603     High High
cufflinks 43.993     High  

0 Strain