Gene : PUB24 A. thaliana TAIR10
Primary Identifier:  ? AT3G11840 Defline:  (1 of 1) PTHR22849//PTHR22849:SF24 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  1161 Name:  ? AT3G11840
Secondary Identifier:  ? PAC:19663445
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11840 0.5kb upstream 0.5kb upstream 2358 true Chr3: 3736400-3738757 Arabidopsis thaliana
AT3G11840 0.5kb upstream 0.5kb upstream 500 false Chr3: 3738258-3738757 Arabidopsis thaliana
AT3G11840 0.5kb downstream 0.5kb downstream 2358 true Chr3: 3735900-3738257 Arabidopsis thaliana
AT3G11840 0.5kb downstream 0.5kb downstream 500 false Chr3: 3735900-3736399 Arabidopsis thaliana
AT3G11840 1.0kb upstream 1.0kb upstream 2858 true Chr3: 3736400-3739257 Arabidopsis thaliana
AT3G11840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3738258-3739257 Arabidopsis thaliana
AT3G11840 1.0kb downstream 1.0kb downstream 2858 true Chr3: 3735400-3738257 Arabidopsis thaliana
AT3G11840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3735400-3736399 Arabidopsis thaliana
AT3G11840 2.0kb upstream 2.0kb upstream 3858 true Chr3: 3736400-3740257 Arabidopsis thaliana
AT3G11840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3738258-3740257 Arabidopsis thaliana
AT3G11840 2.0kb downstream 2.0kb downstream 3858 true Chr3: 3734400-3738257 Arabidopsis thaliana
AT3G11840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3734400-3736399 Arabidopsis thaliana
AT3G11840 5.0kb upstream 5.0kb upstream 6858 true Chr3: 3736400-3743257 Arabidopsis thaliana
AT3G11840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3738258-3743257 Arabidopsis thaliana
AT3G11840 5.0kb downstream 5.0kb downstream 6858 true Chr3: 3731400-3738257 Arabidopsis thaliana
AT3G11840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3731400-3736399 Arabidopsis thaliana
AT3G11840 10.0kb upstream 10.0kb upstream 11858 true Chr3: 3736400-3748257 Arabidopsis thaliana
AT3G11840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3738258-3748257 Arabidopsis thaliana
AT3G11840 10.0kb downstream 10.0kb downstream 11858 true Chr3: 3726400-3738257 Arabidopsis thaliana
AT3G11840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3726400-3736399 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364375 5261 Brassicaceae View MSA
123839654 5264 Brassicales-Malvales View MSA
124345948 5266 SBM View MSA
124251997 5268 Malvidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.374       High
cufflinks 8.775        
cufflinks 5.287       Low
cufflinks 13.947       High
cufflinks 7.063        
cufflinks 6.025        

0 Strain