Gene : AT3G11100 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31307:SF9 - SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR Genomic Order:  1082
Name:  ? AT3G11100 Secondary Identifier:  ? PAC:19660812
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11100 0.5kb upstream 0.5kb upstream 1719 true Chr3: 3476187-3477905 Arabidopsis thaliana
AT3G11100 0.5kb upstream 0.5kb upstream 500 false Chr3: 3477406-3477905 Arabidopsis thaliana
AT3G11100 0.5kb downstream 0.5kb downstream 1719 true Chr3: 3475687-3477405 Arabidopsis thaliana
AT3G11100 0.5kb downstream 0.5kb downstream 500 false Chr3: 3475687-3476186 Arabidopsis thaliana
AT3G11100 1.0kb upstream 1.0kb upstream 2219 true Chr3: 3476187-3478405 Arabidopsis thaliana
AT3G11100 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3477406-3478405 Arabidopsis thaliana
AT3G11100 1.0kb downstream 1.0kb downstream 2219 true Chr3: 3475187-3477405 Arabidopsis thaliana
AT3G11100 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3475187-3476186 Arabidopsis thaliana
AT3G11100 2.0kb upstream 2.0kb upstream 3219 true Chr3: 3476187-3479405 Arabidopsis thaliana
AT3G11100 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3477406-3479405 Arabidopsis thaliana
AT3G11100 2.0kb downstream 2.0kb downstream 3219 true Chr3: 3474187-3477405 Arabidopsis thaliana
AT3G11100 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3474187-3476186 Arabidopsis thaliana
AT3G11100 5.0kb upstream 5.0kb upstream 6219 true Chr3: 3476187-3482405 Arabidopsis thaliana
AT3G11100 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3477406-3482405 Arabidopsis thaliana
AT3G11100 5.0kb downstream 5.0kb downstream 6219 true Chr3: 3471187-3477405 Arabidopsis thaliana
AT3G11100 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3471187-3476186 Arabidopsis thaliana
AT3G11100 10.0kb upstream 10.0kb upstream 11219 true Chr3: 3476187-3487405 Arabidopsis thaliana
AT3G11100 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3477406-3487405 Arabidopsis thaliana
AT3G11100 10.0kb downstream 10.0kb downstream 11219 true Chr3: 3466187-3477405 Arabidopsis thaliana
AT3G11100 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3466187-3476186 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361123 5261 Brassicaceae View MSA
123834886 5264 Brassicales-Malvales View MSA
124321976 5266 SBM View MSA
124249777 5268 Malvidae View MSA
124073016 5270 Rosid View MSA
123747024 5271 Pentapetalae View MSA
122797594 5272 Eudicot View MSA
122048204 5273 Angiosperm View MSA
121351505 5274 Embryophyte View MSA
123382195 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.564        
cufflinks 27.266        
cufflinks 16.416       Low
cufflinks 32.803     High High
cufflinks 19.116        
cufflinks 18.556        

0 Strain