Gene : AT3G08990 A. thaliana TAIR10
Defline:  (1 of 3) PTHR13848//PTHR13848:SF5 - FAMILY NOT NAMED // PROTEIN YIPPEE-LIKE Genomic Order:  850
Name:  ? AT3G08990 Secondary Identifier:  ? PAC:19662062
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G08990 0.5kb upstream 0.5kb upstream 2463 true Chr3: 2742470-2744932 Arabidopsis thaliana
AT3G08990 0.5kb upstream 0.5kb upstream 500 false Chr3: 2742470-2742969 Arabidopsis thaliana
AT3G08990 0.5kb downstream 0.5kb downstream 2463 true Chr3: 2742970-2745432 Arabidopsis thaliana
AT3G08990 0.5kb downstream 0.5kb downstream 500 false Chr3: 2744933-2745432 Arabidopsis thaliana
AT3G08990 1.0kb upstream 1.0kb upstream 2963 true Chr3: 2741970-2744932 Arabidopsis thaliana
AT3G08990 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2741970-2742969 Arabidopsis thaliana
AT3G08990 1.0kb downstream 1.0kb downstream 2963 true Chr3: 2742970-2745932 Arabidopsis thaliana
AT3G08990 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2744933-2745932 Arabidopsis thaliana
AT3G08990 2.0kb upstream 2.0kb upstream 3963 true Chr3: 2740970-2744932 Arabidopsis thaliana
AT3G08990 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2740970-2742969 Arabidopsis thaliana
AT3G08990 2.0kb downstream 2.0kb downstream 3963 true Chr3: 2742970-2746932 Arabidopsis thaliana
AT3G08990 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2744933-2746932 Arabidopsis thaliana
AT3G08990 5.0kb upstream 5.0kb upstream 6963 true Chr3: 2737970-2744932 Arabidopsis thaliana
AT3G08990 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2737970-2742969 Arabidopsis thaliana
AT3G08990 5.0kb downstream 5.0kb downstream 6963 true Chr3: 2742970-2749932 Arabidopsis thaliana
AT3G08990 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2744933-2749932 Arabidopsis thaliana
AT3G08990 10.0kb upstream 10.0kb upstream 11963 true Chr3: 2732970-2744932 Arabidopsis thaliana
AT3G08990 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2732970-2742969 Arabidopsis thaliana
AT3G08990 10.0kb downstream 10.0kb downstream 11963 true Chr3: 2742970-2754932 Arabidopsis thaliana
AT3G08990 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2744933-2754932 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365706 5261 Brassicaceae View MSA
123836343 5264 Brassicales-Malvales View MSA
124351476 5266 SBM View MSA
124250705 5268 Malvidae View MSA
124065020 5270 Rosid View MSA
123748773 5271 Pentapetalae View MSA
122791142 5272 Eudicot View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.209        
cufflinks 2.636       High
cufflinks 0.924        
cufflinks 2.441        
cufflinks 0.781       Low
cufflinks 1.945        

0 Strain