Gene : AT3G05440 A. thaliana TAIR10
Defline:  (1 of 102) PF00168 - C2 domain (C2) Genomic Order:  503
Name:  ? AT3G05440 Secondary Identifier:  ? PAC:19663901
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05440 0.5kb upstream 0.5kb upstream 1049 true Chr3: 1572218-1573266 Arabidopsis thaliana
AT3G05440 0.5kb upstream 0.5kb upstream 500 false Chr3: 1572218-1572717 Arabidopsis thaliana
AT3G05440 0.5kb downstream 0.5kb downstream 1049 true Chr3: 1572718-1573766 Arabidopsis thaliana
AT3G05440 0.5kb downstream 0.5kb downstream 500 false Chr3: 1573267-1573766 Arabidopsis thaliana
AT3G05440 1.0kb upstream 1.0kb upstream 1549 true Chr3: 1571718-1573266 Arabidopsis thaliana
AT3G05440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1571718-1572717 Arabidopsis thaliana
AT3G05440 1.0kb downstream 1.0kb downstream 1549 true Chr3: 1572718-1574266 Arabidopsis thaliana
AT3G05440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1573267-1574266 Arabidopsis thaliana
AT3G05440 2.0kb upstream 2.0kb upstream 2549 true Chr3: 1570718-1573266 Arabidopsis thaliana
AT3G05440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1570718-1572717 Arabidopsis thaliana
AT3G05440 2.0kb downstream 2.0kb downstream 2549 true Chr3: 1572718-1575266 Arabidopsis thaliana
AT3G05440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1573267-1575266 Arabidopsis thaliana
AT3G05440 5.0kb upstream 5.0kb upstream 5549 true Chr3: 1567718-1573266 Arabidopsis thaliana
AT3G05440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1567718-1572717 Arabidopsis thaliana
AT3G05440 5.0kb downstream 5.0kb downstream 5549 true Chr3: 1572718-1578266 Arabidopsis thaliana
AT3G05440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1573267-1578266 Arabidopsis thaliana
AT3G05440 10.0kb upstream 10.0kb upstream 10549 true Chr3: 1562718-1573266 Arabidopsis thaliana
AT3G05440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1562718-1572717 Arabidopsis thaliana
AT3G05440 10.0kb downstream 10.0kb downstream 10549 true Chr3: 1572718-1583266 Arabidopsis thaliana
AT3G05440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1573267-1583266 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377967 5261 Brassicaceae View MSA
123801689 5264 Brassicales-Malvales View MSA
124298965 5266 SBM View MSA
124150494 5268 Malvidae View MSA
123876095 5270 Rosid View MSA
123745109 5271 Pentapetalae View MSA
122795439 5272 Eudicot View MSA
122050053 5273 Angiosperm View MSA
121351739 5274 Embryophyte View MSA
123427392 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.054     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low Low

0 Strain