Gene : IGPD A. thaliana TAIR10
Primary Identifier:  ? AT3G22425 Defline:  (1 of 2) 4.2.1.19 - Imidazoleglycerol-phosphate dehydratase
Genomic Order:  2344 Name:  ? AT3G22425
Secondary Identifier:  ? PAC:19659056
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana HISTSYN-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22425 0.5kb upstream 0.5kb upstream 2669 true Chr3: 7950555-7953223 Arabidopsis thaliana
AT3G22425 0.5kb upstream 0.5kb upstream 500 false Chr3: 7950555-7951054 Arabidopsis thaliana
AT3G22425 0.5kb downstream 0.5kb downstream 2669 true Chr3: 7951055-7953723 Arabidopsis thaliana
AT3G22425 0.5kb downstream 0.5kb downstream 500 false Chr3: 7953224-7953723 Arabidopsis thaliana
AT3G22425 1.0kb upstream 1.0kb upstream 3169 true Chr3: 7950055-7953223 Arabidopsis thaliana
AT3G22425 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7950055-7951054 Arabidopsis thaliana
AT3G22425 1.0kb downstream 1.0kb downstream 3169 true Chr3: 7951055-7954223 Arabidopsis thaliana
AT3G22425 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7953224-7954223 Arabidopsis thaliana
AT3G22425 2.0kb upstream 2.0kb upstream 4169 true Chr3: 7949055-7953223 Arabidopsis thaliana
AT3G22425 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7949055-7951054 Arabidopsis thaliana
AT3G22425 2.0kb downstream 2.0kb downstream 4169 true Chr3: 7951055-7955223 Arabidopsis thaliana
AT3G22425 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7953224-7955223 Arabidopsis thaliana
AT3G22425 5.0kb upstream 5.0kb upstream 7169 true Chr3: 7946055-7953223 Arabidopsis thaliana
AT3G22425 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7946055-7951054 Arabidopsis thaliana
AT3G22425 5.0kb downstream 5.0kb downstream 7169 true Chr3: 7951055-7958223 Arabidopsis thaliana
AT3G22425 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7953224-7958223 Arabidopsis thaliana
AT3G22425 10.0kb upstream 10.0kb upstream 12169 true Chr3: 7941055-7953223 Arabidopsis thaliana
AT3G22425 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7941055-7951054 Arabidopsis thaliana
AT3G22425 10.0kb downstream 10.0kb downstream 12169 true Chr3: 7951055-7963223 Arabidopsis thaliana
AT3G22425 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7953224-7963223 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378389 5261 Brassicaceae View MSA
123833237 5264 Brassicales-Malvales View MSA
124344750 5266 SBM View MSA
124241761 5268 Malvidae View MSA
124067658 5270 Rosid View MSA
123737408 5271 Pentapetalae View MSA
122786767 5272 Eudicot View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.882       Low
cufflinks 5.862        
cufflinks 5.325        
cufflinks 6.129       High
cufflinks 5.753        
cufflinks 4.837       Low

0 Strain