Gene : AT3G22260 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12419//PTHR12419:SF6 - OTU DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2326
Name:  ? AT3G22260 Secondary Identifier:  ? PAC:19661383
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22260 0.5kb upstream 0.5kb upstream 3157 true Chr3: 7870392-7873548 Arabidopsis thaliana
AT3G22260 0.5kb upstream 0.5kb upstream 500 false Chr3: 7870392-7870891 Arabidopsis thaliana
AT3G22260 0.5kb downstream 0.5kb downstream 3157 true Chr3: 7870892-7874048 Arabidopsis thaliana
AT3G22260 0.5kb downstream 0.5kb downstream 500 false Chr3: 7873549-7874048 Arabidopsis thaliana
AT3G22260 1.0kb upstream 1.0kb upstream 3657 true Chr3: 7869892-7873548 Arabidopsis thaliana
AT3G22260 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7869892-7870891 Arabidopsis thaliana
AT3G22260 1.0kb downstream 1.0kb downstream 3657 true Chr3: 7870892-7874548 Arabidopsis thaliana
AT3G22260 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7873549-7874548 Arabidopsis thaliana
AT3G22260 2.0kb upstream 2.0kb upstream 4657 true Chr3: 7868892-7873548 Arabidopsis thaliana
AT3G22260 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7868892-7870891 Arabidopsis thaliana
AT3G22260 2.0kb downstream 2.0kb downstream 4657 true Chr3: 7870892-7875548 Arabidopsis thaliana
AT3G22260 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7873549-7875548 Arabidopsis thaliana
AT3G22260 5.0kb upstream 5.0kb upstream 7657 true Chr3: 7865892-7873548 Arabidopsis thaliana
AT3G22260 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7865892-7870891 Arabidopsis thaliana
AT3G22260 5.0kb downstream 5.0kb downstream 7657 true Chr3: 7870892-7878548 Arabidopsis thaliana
AT3G22260 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7873549-7878548 Arabidopsis thaliana
AT3G22260 10.0kb upstream 10.0kb upstream 12657 true Chr3: 7860892-7873548 Arabidopsis thaliana
AT3G22260 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7860892-7870891 Arabidopsis thaliana
AT3G22260 10.0kb downstream 10.0kb downstream 12657 true Chr3: 7870892-7883548 Arabidopsis thaliana
AT3G22260 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7873549-7883548 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362865 5261 Brassicaceae View MSA
123840223 5264 Brassicales-Malvales View MSA
124340656 5266 SBM View MSA
124239672 5268 Malvidae View MSA
124068845 5270 Rosid View MSA
123751936 5271 Pentapetalae View MSA
122788372 5272 Eudicot View MSA
122048999 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.724        
cufflinks 2.806        
cufflinks 1.33       Low
cufflinks 2.688        
cufflinks 1.731        
cufflinks 2.665        

0 Strain