Gene : GC6 A. thaliana TAIR10
Primary Identifier:  ? AT3G27530 Defline:  (1 of 1) PTHR10013 - GENERAL VESICULAR TRANSPORT FACTOR P115
Genomic Order:  2914 Name:  ? AT3G27530
Secondary Identifier:  ? PAC:19662687
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27530 0.5kb upstream 0.5kb upstream 6945 true Chr3: 10193569-10200513 Arabidopsis thaliana
AT3G27530 0.5kb upstream 0.5kb upstream 500 false Chr3: 10200014-10200513 Arabidopsis thaliana
AT3G27530 0.5kb downstream 0.5kb downstream 6945 true Chr3: 10193069-10200013 Arabidopsis thaliana
AT3G27530 0.5kb downstream 0.5kb downstream 500 false Chr3: 10193069-10193568 Arabidopsis thaliana
AT3G27530 1.0kb upstream 1.0kb upstream 7445 true Chr3: 10193569-10201013 Arabidopsis thaliana
AT3G27530 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10200014-10201013 Arabidopsis thaliana
AT3G27530 1.0kb downstream 1.0kb downstream 7445 true Chr3: 10192569-10200013 Arabidopsis thaliana
AT3G27530 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10192569-10193568 Arabidopsis thaliana
AT3G27530 2.0kb upstream 2.0kb upstream 8445 true Chr3: 10193569-10202013 Arabidopsis thaliana
AT3G27530 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10200014-10202013 Arabidopsis thaliana
AT3G27530 2.0kb downstream 2.0kb downstream 8445 true Chr3: 10191569-10200013 Arabidopsis thaliana
AT3G27530 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10191569-10193568 Arabidopsis thaliana
AT3G27530 5.0kb upstream 5.0kb upstream 11445 true Chr3: 10193569-10205013 Arabidopsis thaliana
AT3G27530 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10200014-10205013 Arabidopsis thaliana
AT3G27530 5.0kb downstream 5.0kb downstream 11445 true Chr3: 10188569-10200013 Arabidopsis thaliana
AT3G27530 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10188569-10193568 Arabidopsis thaliana
AT3G27530 10.0kb upstream 10.0kb upstream 16445 true Chr3: 10193569-10210013 Arabidopsis thaliana
AT3G27530 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10200014-10210013 Arabidopsis thaliana
AT3G27530 10.0kb downstream 10.0kb downstream 16445 true Chr3: 10183569-10200013 Arabidopsis thaliana
AT3G27530 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10183569-10193568 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027522 5273 Angiosperm View MSA
122376179 5261 Brassicaceae View MSA
123834038 5264 Brassicales-Malvales View MSA
124341198 5266 SBM View MSA
124241563 5268 Malvidae View MSA
124060479 5270 Rosid View MSA
123743373 5271 Pentapetalae View MSA
122793018 5272 Eudicot View MSA
121346533 5274 Embryophyte View MSA
123425345 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.61        
cufflinks 11.641        
cufflinks 6.735       Low
cufflinks 12.138        
cufflinks 7.367       Low
cufflinks 12.906       High

0 Strain