Gene : AT3G27500 A. thaliana TAIR10
Defline:  (1 of 126) PTHR32410//PTHR32410:SF152 - FAMILY NOT NAMED // C1 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  2910
Name:  ? AT3G27500 Secondary Identifier:  ? PAC:19659244
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27500 0.5kb upstream 0.5kb upstream 2749 true Chr3: 10182833-10185581 Arabidopsis thaliana
AT3G27500 0.5kb upstream 0.5kb upstream 500 false Chr3: 10185082-10185581 Arabidopsis thaliana
AT3G27500 0.5kb downstream 0.5kb downstream 2749 true Chr3: 10182333-10185081 Arabidopsis thaliana
AT3G27500 0.5kb downstream 0.5kb downstream 500 false Chr3: 10182333-10182832 Arabidopsis thaliana
AT3G27500 1.0kb upstream 1.0kb upstream 3249 true Chr3: 10182833-10186081 Arabidopsis thaliana
AT3G27500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10185082-10186081 Arabidopsis thaliana
AT3G27500 1.0kb downstream 1.0kb downstream 3249 true Chr3: 10181833-10185081 Arabidopsis thaliana
AT3G27500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10181833-10182832 Arabidopsis thaliana
AT3G27500 2.0kb upstream 2.0kb upstream 4249 true Chr3: 10182833-10187081 Arabidopsis thaliana
AT3G27500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10185082-10187081 Arabidopsis thaliana
AT3G27500 2.0kb downstream 2.0kb downstream 4249 true Chr3: 10180833-10185081 Arabidopsis thaliana
AT3G27500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10180833-10182832 Arabidopsis thaliana
AT3G27500 5.0kb upstream 5.0kb upstream 7249 true Chr3: 10182833-10190081 Arabidopsis thaliana
AT3G27500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10185082-10190081 Arabidopsis thaliana
AT3G27500 5.0kb downstream 5.0kb downstream 7249 true Chr3: 10177833-10185081 Arabidopsis thaliana
AT3G27500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10177833-10182832 Arabidopsis thaliana
AT3G27500 10.0kb upstream 10.0kb upstream 12249 true Chr3: 10182833-10195081 Arabidopsis thaliana
AT3G27500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10185082-10195081 Arabidopsis thaliana
AT3G27500 10.0kb downstream 10.0kb downstream 12249 true Chr3: 10172833-10185081 Arabidopsis thaliana
AT3G27500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10172833-10182832 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379485 5261 Brassicaceae View MSA
123841170 5264 Brassicales-Malvales View MSA
124322862 5266 SBM View MSA
124254358 5268 Malvidae View MSA
124070692 5270 Rosid View MSA
123751823 5271 Pentapetalae View MSA
122797568 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.407        
cufflinks 2.308        
cufflinks 0.228     Low  
cufflinks 3.107        
cufflinks 0.099     Low Low
cufflinks 5.072       High

0 Strain