Gene : AT3G15980 A. thaliana TAIR10
Defline:  (1 of 3) K17302 - coatomer, subunit beta' (COPB2, SEC27) Genomic Order:  1638
Name:  ? AT3G15980 Secondary Identifier:  ? PAC:19662267
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G15980 0.5kb upstream 0.5kb upstream 7750 true Chr3: 5411292-5419041 Arabidopsis thaliana
AT3G15980 0.5kb upstream 0.5kb upstream 500 false Chr3: 5418542-5419041 Arabidopsis thaliana
AT3G15980 0.5kb downstream 0.5kb downstream 7750 true Chr3: 5410792-5418541 Arabidopsis thaliana
AT3G15980 0.5kb downstream 0.5kb downstream 500 false Chr3: 5410792-5411291 Arabidopsis thaliana
AT3G15980 1.0kb upstream 1.0kb upstream 8250 true Chr3: 5411292-5419541 Arabidopsis thaliana
AT3G15980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5418542-5419541 Arabidopsis thaliana
AT3G15980 1.0kb downstream 1.0kb downstream 8250 true Chr3: 5410292-5418541 Arabidopsis thaliana
AT3G15980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5410292-5411291 Arabidopsis thaliana
AT3G15980 2.0kb upstream 2.0kb upstream 9250 true Chr3: 5411292-5420541 Arabidopsis thaliana
AT3G15980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5418542-5420541 Arabidopsis thaliana
AT3G15980 2.0kb downstream 2.0kb downstream 9250 true Chr3: 5409292-5418541 Arabidopsis thaliana
AT3G15980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5409292-5411291 Arabidopsis thaliana
AT3G15980 5.0kb upstream 5.0kb upstream 12250 true Chr3: 5411292-5423541 Arabidopsis thaliana
AT3G15980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5418542-5423541 Arabidopsis thaliana
AT3G15980 5.0kb downstream 5.0kb downstream 12250 true Chr3: 5406292-5418541 Arabidopsis thaliana
AT3G15980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5406292-5411291 Arabidopsis thaliana
AT3G15980 10.0kb upstream 10.0kb upstream 17250 true Chr3: 5411292-5428541 Arabidopsis thaliana
AT3G15980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5418542-5428541 Arabidopsis thaliana
AT3G15980 10.0kb downstream 10.0kb downstream 17250 true Chr3: 5401292-5418541 Arabidopsis thaliana
AT3G15980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5401292-5411291 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379434 5261 Brassicaceae View MSA
123837791 5264 Brassicales-Malvales View MSA
124346032 5266 SBM View MSA
124252194 5268 Malvidae View MSA
124066819 5270 Rosid View MSA
123745194 5271 Pentapetalae View MSA
122792729 5272 Eudicot View MSA
122046089 5273 Angiosperm View MSA
121350905 5274 Embryophyte View MSA
123424044 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.228        
cufflinks 3.733        
cufflinks 2.313       Low
cufflinks 3.929        
cufflinks 2.36       Low
cufflinks 4.41       High

0 Strain