Gene : APG8H A. thaliana TAIR10
Primary Identifier:  ? AT3G15580 Defline:  (1 of 1) PTHR10969:SF25 - AUTOPHAGY-RELATED PROTEIN 8I
Genomic Order:  1596 Name:  ? AT3G15580
Secondary Identifier:  ? PAC:19661376
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G15580 0.5kb upstream 0.5kb upstream 1701 true Chr3: 5273895-5275595 Arabidopsis thaliana
AT3G15580 0.5kb upstream 0.5kb upstream 500 false Chr3: 5275096-5275595 Arabidopsis thaliana
AT3G15580 0.5kb downstream 0.5kb downstream 1701 true Chr3: 5273395-5275095 Arabidopsis thaliana
AT3G15580 0.5kb downstream 0.5kb downstream 500 false Chr3: 5273395-5273894 Arabidopsis thaliana
AT3G15580 1.0kb upstream 1.0kb upstream 2201 true Chr3: 5273895-5276095 Arabidopsis thaliana
AT3G15580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5275096-5276095 Arabidopsis thaliana
AT3G15580 1.0kb downstream 1.0kb downstream 2201 true Chr3: 5272895-5275095 Arabidopsis thaliana
AT3G15580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5272895-5273894 Arabidopsis thaliana
AT3G15580 2.0kb upstream 2.0kb upstream 3201 true Chr3: 5273895-5277095 Arabidopsis thaliana
AT3G15580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5275096-5277095 Arabidopsis thaliana
AT3G15580 2.0kb downstream 2.0kb downstream 3201 true Chr3: 5271895-5275095 Arabidopsis thaliana
AT3G15580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5271895-5273894 Arabidopsis thaliana
AT3G15580 5.0kb upstream 5.0kb upstream 6201 true Chr3: 5273895-5280095 Arabidopsis thaliana
AT3G15580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5275096-5280095 Arabidopsis thaliana
AT3G15580 5.0kb downstream 5.0kb downstream 6201 true Chr3: 5268895-5275095 Arabidopsis thaliana
AT3G15580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5268895-5273894 Arabidopsis thaliana
AT3G15580 10.0kb upstream 10.0kb upstream 11201 true Chr3: 5273895-5285095 Arabidopsis thaliana
AT3G15580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5275096-5285095 Arabidopsis thaliana
AT3G15580 10.0kb downstream 10.0kb downstream 11201 true Chr3: 5263895-5275095 Arabidopsis thaliana
AT3G15580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5263895-5273894 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363740 5261 Brassicaceae View MSA
123835569 5264 Brassicales-Malvales View MSA
124338704 5266 SBM View MSA
124244916 5268 Malvidae View MSA
124068997 5270 Rosid View MSA
123743187 5271 Pentapetalae View MSA
122792251 5272 Eudicot View MSA
122048918 5273 Angiosperm View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.878        
cufflinks 16.831        
cufflinks 23.142        
cufflinks 17.756        
cufflinks 31.041     High High
cufflinks 14.383       Low

0 Strain