Gene : AT3G15480 A. thaliana TAIR10
Defline:  (1 of 15) PF06749 - Protein of unknown function (DUF1218) (DUF1218) Genomic Order:  1583
Name:  ? AT3G15480 Secondary Identifier:  ? PAC:19664344
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G15480 0.5kb upstream 0.5kb upstream 2042 true Chr3: 5226248-5228289 Arabidopsis thaliana
AT3G15480 0.5kb upstream 0.5kb upstream 500 false Chr3: 5227790-5228289 Arabidopsis thaliana
AT3G15480 0.5kb downstream 0.5kb downstream 2042 true Chr3: 5225748-5227789 Arabidopsis thaliana
AT3G15480 0.5kb downstream 0.5kb downstream 500 false Chr3: 5225748-5226247 Arabidopsis thaliana
AT3G15480 1.0kb upstream 1.0kb upstream 2542 true Chr3: 5226248-5228789 Arabidopsis thaliana
AT3G15480 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5227790-5228789 Arabidopsis thaliana
AT3G15480 1.0kb downstream 1.0kb downstream 2542 true Chr3: 5225248-5227789 Arabidopsis thaliana
AT3G15480 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5225248-5226247 Arabidopsis thaliana
AT3G15480 2.0kb upstream 2.0kb upstream 3542 true Chr3: 5226248-5229789 Arabidopsis thaliana
AT3G15480 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5227790-5229789 Arabidopsis thaliana
AT3G15480 2.0kb downstream 2.0kb downstream 3542 true Chr3: 5224248-5227789 Arabidopsis thaliana
AT3G15480 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5224248-5226247 Arabidopsis thaliana
AT3G15480 5.0kb upstream 5.0kb upstream 6542 true Chr3: 5226248-5232789 Arabidopsis thaliana
AT3G15480 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5227790-5232789 Arabidopsis thaliana
AT3G15480 5.0kb downstream 5.0kb downstream 6542 true Chr3: 5221248-5227789 Arabidopsis thaliana
AT3G15480 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5221248-5226247 Arabidopsis thaliana
AT3G15480 10.0kb upstream 10.0kb upstream 11542 true Chr3: 5226248-5237789 Arabidopsis thaliana
AT3G15480 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5227790-5237789 Arabidopsis thaliana
AT3G15480 10.0kb downstream 10.0kb downstream 11542 true Chr3: 5216248-5227789 Arabidopsis thaliana
AT3G15480 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5216248-5226247 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041273 5273 Angiosperm View MSA
122373601 5261 Brassicaceae View MSA
123800583 5264 Brassicales-Malvales View MSA
124297983 5266 SBM View MSA
124250780 5268 Malvidae View MSA
124066050 5270 Rosid View MSA
123742828 5271 Pentapetalae View MSA
122791764 5272 Eudicot View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.678     High  
cufflinks 63.715     High  
cufflinks 24.752       Low
cufflinks 58.896     High  
cufflinks 23.976       Low
cufflinks 73.443     High High

0 Strain