Gene : NCED3 A. thaliana TAIR10
Primary Identifier:  ? AT3G14440 Defline:  (1 of 2) PTHR10543//PTHR10543:SF26 - BETA-CAROTENE DIOXYGENASE // 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED
Genomic Order:  1469 Name:  ? AT3G14440
Secondary Identifier:  ? PAC:19662583
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G14440 0.5kb upstream 0.5kb upstream 2812 true Chr3: 4831288-4834099 Arabidopsis thaliana
AT3G14440 0.5kb upstream 0.5kb upstream 500 false Chr3: 4833600-4834099 Arabidopsis thaliana
AT3G14440 0.5kb downstream 0.5kb downstream 2812 true Chr3: 4830788-4833599 Arabidopsis thaliana
AT3G14440 0.5kb downstream 0.5kb downstream 500 false Chr3: 4830788-4831287 Arabidopsis thaliana
AT3G14440 1.0kb upstream 1.0kb upstream 3312 true Chr3: 4831288-4834599 Arabidopsis thaliana
AT3G14440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4833600-4834599 Arabidopsis thaliana
AT3G14440 1.0kb downstream 1.0kb downstream 3312 true Chr3: 4830288-4833599 Arabidopsis thaliana
AT3G14440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4830288-4831287 Arabidopsis thaliana
AT3G14440 2.0kb upstream 2.0kb upstream 4312 true Chr3: 4831288-4835599 Arabidopsis thaliana
AT3G14440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4833600-4835599 Arabidopsis thaliana
AT3G14440 2.0kb downstream 2.0kb downstream 4312 true Chr3: 4829288-4833599 Arabidopsis thaliana
AT3G14440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4829288-4831287 Arabidopsis thaliana
AT3G14440 5.0kb upstream 5.0kb upstream 7312 true Chr3: 4831288-4838599 Arabidopsis thaliana
AT3G14440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4833600-4838599 Arabidopsis thaliana
AT3G14440 5.0kb downstream 5.0kb downstream 7312 true Chr3: 4826288-4833599 Arabidopsis thaliana
AT3G14440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4826288-4831287 Arabidopsis thaliana
AT3G14440 10.0kb upstream 10.0kb upstream 12312 true Chr3: 4831288-4843599 Arabidopsis thaliana
AT3G14440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4833600-4843599 Arabidopsis thaliana
AT3G14440 10.0kb downstream 10.0kb downstream 12312 true Chr3: 4821288-4833599 Arabidopsis thaliana
AT3G14440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4821288-4831287 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361119 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.002       Low
cufflinks 5.205        
cufflinks 4.008        
cufflinks 7.201       High
cufflinks 2.061       Low
cufflinks 5.044        

0 Strain