Gene : RHD3 A. thaliana TAIR10
Primary Identifier:  ? AT3G13870 Defline:  (1 of 1) PTHR11649:SF62 - PROTEIN SEY1 HOMOLOG
Genomic Order:  1401 Name:  ? AT3G13870
Secondary Identifier:  ? PAC:19659194
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13870 0.5kb upstream 0.5kb upstream 6349 true Chr3: 4565412-4571760 Arabidopsis thaliana
AT3G13870 0.5kb upstream 0.5kb upstream 500 false Chr3: 4571261-4571760 Arabidopsis thaliana
AT3G13870 0.5kb downstream 0.5kb downstream 6349 true Chr3: 4564912-4571260 Arabidopsis thaliana
AT3G13870 0.5kb downstream 0.5kb downstream 500 false Chr3: 4564912-4565411 Arabidopsis thaliana
AT3G13870 1.0kb upstream 1.0kb upstream 6849 true Chr3: 4565412-4572260 Arabidopsis thaliana
AT3G13870 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4571261-4572260 Arabidopsis thaliana
AT3G13870 1.0kb downstream 1.0kb downstream 6849 true Chr3: 4564412-4571260 Arabidopsis thaliana
AT3G13870 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4564412-4565411 Arabidopsis thaliana
AT3G13870 2.0kb upstream 2.0kb upstream 7849 true Chr3: 4565412-4573260 Arabidopsis thaliana
AT3G13870 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4571261-4573260 Arabidopsis thaliana
AT3G13870 2.0kb downstream 2.0kb downstream 7849 true Chr3: 4563412-4571260 Arabidopsis thaliana
AT3G13870 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4563412-4565411 Arabidopsis thaliana
AT3G13870 5.0kb upstream 5.0kb upstream 10849 true Chr3: 4565412-4576260 Arabidopsis thaliana
AT3G13870 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4571261-4576260 Arabidopsis thaliana
AT3G13870 5.0kb downstream 5.0kb downstream 10849 true Chr3: 4560412-4571260 Arabidopsis thaliana
AT3G13870 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4560412-4565411 Arabidopsis thaliana
AT3G13870 10.0kb upstream 10.0kb upstream 15849 true Chr3: 4565412-4581260 Arabidopsis thaliana
AT3G13870 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4571261-4581260 Arabidopsis thaliana
AT3G13870 10.0kb downstream 10.0kb downstream 15849 true Chr3: 4555412-4571260 Arabidopsis thaliana
AT3G13870 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4555412-4565411 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360404 5261 Brassicaceae View MSA
123832328 5264 Brassicales-Malvales View MSA
124336870 5266 SBM View MSA
124253658 5268 Malvidae View MSA
124066568 5270 Rosid View MSA
123749417 5271 Pentapetalae View MSA
122789407 5272 Eudicot View MSA
122048345 5273 Angiosperm View MSA
121345089 5274 Embryophyte View MSA
123427050 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.512        
cufflinks 18.762        
cufflinks 10.51       Low
cufflinks 19.894        
cufflinks 10.649       Low
cufflinks 21.584       High

0 Strain