Gene : SCL30A A. thaliana TAIR10

Primary Identifier:  ? AT3G13570 Defline:  (1 of 2) PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED
Genomic Order:  1359 Name:  ? AT3G13570
Secondary Identifier:  ? PAC:19663804

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13570 0.5kb upstream 0.5kb upstream 3362 true Chr3: 4429298-4432659 Arabidopsis thaliana
AT3G13570 0.5kb upstream 0.5kb upstream 500 false Chr3: 4432160-4432659 Arabidopsis thaliana
AT3G13570 0.5kb downstream 0.5kb downstream 3362 true Chr3: 4428798-4432159 Arabidopsis thaliana
AT3G13570 0.5kb downstream 0.5kb downstream 500 false Chr3: 4428798-4429297 Arabidopsis thaliana
AT3G13570 1.0kb upstream 1.0kb upstream 3862 true Chr3: 4429298-4433159 Arabidopsis thaliana
AT3G13570 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4432160-4433159 Arabidopsis thaliana
AT3G13570 1.0kb downstream 1.0kb downstream 3862 true Chr3: 4428298-4432159 Arabidopsis thaliana
AT3G13570 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4428298-4429297 Arabidopsis thaliana
AT3G13570 2.0kb upstream 2.0kb upstream 4862 true Chr3: 4429298-4434159 Arabidopsis thaliana
AT3G13570 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4432160-4434159 Arabidopsis thaliana
AT3G13570 2.0kb downstream 2.0kb downstream 4862 true Chr3: 4427298-4432159 Arabidopsis thaliana
AT3G13570 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4427298-4429297 Arabidopsis thaliana
AT3G13570 5.0kb upstream 5.0kb upstream 7862 true Chr3: 4429298-4437159 Arabidopsis thaliana
AT3G13570 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4432160-4437159 Arabidopsis thaliana
AT3G13570 5.0kb downstream 5.0kb downstream 7862 true Chr3: 4424298-4432159 Arabidopsis thaliana
AT3G13570 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4424298-4429297 Arabidopsis thaliana
AT3G13570 10.0kb upstream 10.0kb upstream 12862 true Chr3: 4429298-4442159 Arabidopsis thaliana
AT3G13570 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4432160-4442159 Arabidopsis thaliana
AT3G13570 10.0kb downstream 10.0kb downstream 12862 true Chr3: 4419298-4432159 Arabidopsis thaliana
AT3G13570 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4419298-4429297 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374499 5261 Brassicaceae View MSA
123837044 5264 Brassicales-Malvales View MSA
124336689 5266 SBM View MSA
124238821 5268 Malvidae View MSA
124061952 5270 Rosid View MSA
123751655 5271 Pentapetalae View MSA
122788413 5272 Eudicot View MSA
122045186 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349478 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.023        
cufflinks 24.643        
cufflinks 11.617        
cufflinks 24.578        
cufflinks 11.374       Low
cufflinks 25.751        

0 Strain