Gene : PA200 A. thaliana TAIR10
Primary Identifier:  ? AT3G13330 Defline:  (1 of 1) K06699 - proteasome activator subunit 4 (PSME4)
Genomic Order:  1328 Name:  ? AT3G13330
Secondary Identifier:  ? PAC:19664031
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13330 0.5kb upstream 0.5kb upstream 10915 true Chr3: 4319647-4330561 Arabidopsis thaliana
AT3G13330 0.5kb upstream 0.5kb upstream 500 false Chr3: 4330062-4330561 Arabidopsis thaliana
AT3G13330 0.5kb downstream 0.5kb downstream 10915 true Chr3: 4319147-4330061 Arabidopsis thaliana
AT3G13330 0.5kb downstream 0.5kb downstream 500 false Chr3: 4319147-4319646 Arabidopsis thaliana
AT3G13330 1.0kb upstream 1.0kb upstream 11415 true Chr3: 4319647-4331061 Arabidopsis thaliana
AT3G13330 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4330062-4331061 Arabidopsis thaliana
AT3G13330 1.0kb downstream 1.0kb downstream 11415 true Chr3: 4318647-4330061 Arabidopsis thaliana
AT3G13330 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4318647-4319646 Arabidopsis thaliana
AT3G13330 2.0kb upstream 2.0kb upstream 12415 true Chr3: 4319647-4332061 Arabidopsis thaliana
AT3G13330 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4330062-4332061 Arabidopsis thaliana
AT3G13330 2.0kb downstream 2.0kb downstream 12415 true Chr3: 4317647-4330061 Arabidopsis thaliana
AT3G13330 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4317647-4319646 Arabidopsis thaliana
AT3G13330 5.0kb upstream 5.0kb upstream 15415 true Chr3: 4319647-4335061 Arabidopsis thaliana
AT3G13330 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4330062-4335061 Arabidopsis thaliana
AT3G13330 5.0kb downstream 5.0kb downstream 15415 true Chr3: 4314647-4330061 Arabidopsis thaliana
AT3G13330 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4314647-4319646 Arabidopsis thaliana
AT3G13330 10.0kb upstream 10.0kb upstream 20415 true Chr3: 4319647-4340061 Arabidopsis thaliana
AT3G13330 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4330062-4340061 Arabidopsis thaliana
AT3G13330 10.0kb downstream 10.0kb downstream 20415 true Chr3: 4309647-4330061 Arabidopsis thaliana
AT3G13330 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4309647-4319646 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370275 5261 Brassicaceae View MSA
123833634 5264 Brassicales-Malvales View MSA
124340252 5266 SBM View MSA
124237435 5268 Malvidae View MSA
124067212 5270 Rosid View MSA
123738466 5271 Pentapetalae View MSA
122787413 5272 Eudicot View MSA
122041914 5273 Angiosperm View MSA
121345239 5274 Embryophyte View MSA
123424572 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.001        
cufflinks 12.722        
cufflinks 8.065       Low
cufflinks 14.357        
cufflinks 10.739        
cufflinks 13.021        

0 Strain