Gene : AT3G21300 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11061//PTHR11061:SF30 - RNA M5U METHYLTRANSFERASE FAMILY // TRNA (URACIL(54)-C(5))-METHYLTRANSFERASE Genomic Order:  2218
Name:  ? AT3G21300 Secondary Identifier:  ? PAC:19660768
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21300 0.5kb upstream 0.5kb upstream 3351 true Chr3: 7493439-7496789 Arabidopsis thaliana
AT3G21300 0.5kb upstream 0.5kb upstream 500 false Chr3: 7496290-7496789 Arabidopsis thaliana
AT3G21300 0.5kb downstream 0.5kb downstream 3351 true Chr3: 7492939-7496289 Arabidopsis thaliana
AT3G21300 0.5kb downstream 0.5kb downstream 500 false Chr3: 7492939-7493438 Arabidopsis thaliana
AT3G21300 1.0kb upstream 1.0kb upstream 3851 true Chr3: 7493439-7497289 Arabidopsis thaliana
AT3G21300 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7496290-7497289 Arabidopsis thaliana
AT3G21300 1.0kb downstream 1.0kb downstream 3851 true Chr3: 7492439-7496289 Arabidopsis thaliana
AT3G21300 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7492439-7493438 Arabidopsis thaliana
AT3G21300 2.0kb upstream 2.0kb upstream 4851 true Chr3: 7493439-7498289 Arabidopsis thaliana
AT3G21300 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7496290-7498289 Arabidopsis thaliana
AT3G21300 2.0kb downstream 2.0kb downstream 4851 true Chr3: 7491439-7496289 Arabidopsis thaliana
AT3G21300 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7491439-7493438 Arabidopsis thaliana
AT3G21300 5.0kb upstream 5.0kb upstream 7851 true Chr3: 7493439-7501289 Arabidopsis thaliana
AT3G21300 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7496290-7501289 Arabidopsis thaliana
AT3G21300 5.0kb downstream 5.0kb downstream 7851 true Chr3: 7488439-7496289 Arabidopsis thaliana
AT3G21300 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7488439-7493438 Arabidopsis thaliana
AT3G21300 10.0kb upstream 10.0kb upstream 12851 true Chr3: 7493439-7506289 Arabidopsis thaliana
AT3G21300 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7496290-7506289 Arabidopsis thaliana
AT3G21300 10.0kb downstream 10.0kb downstream 12851 true Chr3: 7483439-7496289 Arabidopsis thaliana
AT3G21300 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7483439-7493438 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360374 5261 Brassicaceae View MSA
123828162 5264 Brassicales-Malvales View MSA
124340624 5266 SBM View MSA
124241822 5268 Malvidae View MSA
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.928       High
cufflinks 2.198        
cufflinks 6.147       High
cufflinks 2.07        
cufflinks 3.456        
cufflinks 2.422        

0 Strain