Gene : AT3G17712 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13471 - TETRATRICOPEPTIDE-LIKE HELICAL Genomic Order:  1828
Name:  ? AT3G17712 Secondary Identifier:  ? PAC:19665241
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17712 0.5kb upstream 0.5kb upstream 3918 true Chr3: 6056370-6060287 Arabidopsis thaliana
AT3G17712 0.5kb upstream 0.5kb upstream 500 false Chr3: 6056370-6056869 Arabidopsis thaliana
AT3G17712 0.5kb downstream 0.5kb downstream 3918 true Chr3: 6056870-6060787 Arabidopsis thaliana
AT3G17712 0.5kb downstream 0.5kb downstream 500 false Chr3: 6060288-6060787 Arabidopsis thaliana
AT3G17712 1.0kb upstream 1.0kb upstream 4418 true Chr3: 6055870-6060287 Arabidopsis thaliana
AT3G17712 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6055870-6056869 Arabidopsis thaliana
AT3G17712 1.0kb downstream 1.0kb downstream 4418 true Chr3: 6056870-6061287 Arabidopsis thaliana
AT3G17712 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6060288-6061287 Arabidopsis thaliana
AT3G17712 2.0kb upstream 2.0kb upstream 5418 true Chr3: 6054870-6060287 Arabidopsis thaliana
AT3G17712 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6054870-6056869 Arabidopsis thaliana
AT3G17712 2.0kb downstream 2.0kb downstream 5418 true Chr3: 6056870-6062287 Arabidopsis thaliana
AT3G17712 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6060288-6062287 Arabidopsis thaliana
AT3G17712 5.0kb upstream 5.0kb upstream 8418 true Chr3: 6051870-6060287 Arabidopsis thaliana
AT3G17712 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6051870-6056869 Arabidopsis thaliana
AT3G17712 5.0kb downstream 5.0kb downstream 8418 true Chr3: 6056870-6065287 Arabidopsis thaliana
AT3G17712 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6060288-6065287 Arabidopsis thaliana
AT3G17712 10.0kb upstream 10.0kb upstream 13418 true Chr3: 6046870-6060287 Arabidopsis thaliana
AT3G17712 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6046870-6056869 Arabidopsis thaliana
AT3G17712 10.0kb downstream 10.0kb downstream 13418 true Chr3: 6056870-6070287 Arabidopsis thaliana
AT3G17712 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6060288-6070287 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031045 5273 Angiosperm View MSA
122330345 5261 Brassicaceae Singleton cluster - no MSA
123771598 5264 Brassicales-Malvales Singleton cluster - no MSA
124270126 5266 SBM Singleton cluster - no MSA
124126225 5268 Malvidae Singleton cluster - no MSA
123855152 5270 Rosid Singleton cluster - no MSA
123441147 5271 Pentapetalae Singleton cluster - no MSA
122476732 5272 Eudicot Singleton cluster - no MSA
121300144 5274 Embryophyte View MSA
123337945 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.437        
cufflinks 1.0        
cufflinks 0.451        
cufflinks 1.015        
cufflinks 0.339       Low
cufflinks 0.944        

0 Strain